PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AUR62000560-RA
Organism
Chenopodium quinoa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
Family M-type_MADS
Protein Properties Length: 243aa    MW: 26913.1 Da    PI: 5.4455
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AUR62000560-RAgenomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.33.1e-214088149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+i nk+ +qvtf+kRr g++KKA+EL+ LC+ evavi fs  gkl+ +
  AUR62000560-RA 40 KPIINKTSKQVTFTKRRGGLFKKASELCSLCGSEVAVITFSGAGKLFSF 88
                    6799******************************************988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MEEYLDDLRI EDQTLNFPED FIVEPIVMKK KTGKQKIEIK PIINKTSKQV TFTKRRGGLF  60
KKASELCSLC GSEVAVITFS GAGKLFSFGH PNADAVVSRY INYTRGVEXX XXXXXXGGNG  120
NEFGTGVLSE QYKRVLTNIE VEKKRSDHVI GSSSSSNGSS PRGDSSEFGF WWDKPIDNLG  180
LSELEQLKVS LEGLRDQVSS RVNSINNNNN CSSNSTNQEV VDQKEIVYPS SLLPVNDFSN  240
CF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.19e-32M-type_MADS family protein