PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62000369-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

M-type_MADS

Protein Properties

Length: 552aa MW: 61234.1 Da PI: 4.735

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62000369-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	50.1	3.5e-16	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k ien+ rq+ f+kRrng++KKA EL Cd++ vi fs+ g+l ++ AUR62000369-RA 9 KLIENEPSRQICFAKRRNGLMKKALELHMVCDVDSIVIAFSPAGRLSFFC 58 569******************************************98775 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MVKKIEQLKL IENEPSRQIC FAKRRNGLMK KALELHMVCD VDSIVIAFSP AGRLSFFCGG 60 NRRVEDIIRH FAALPEDIRG FQIPDPELWV LLETLDKLKE QTKEHIQNDS TNDLGDQTCV 120 VVKQQELTAK DNEDASQEMP DAMNGAETSS PKPVDVVQQA EPEHQVNENS NENQHQSPTA 180 EGIQDALMRQ SSPSKHLPPE VASPNLLPEV ASPDLLPVVA IPNPQHAGTS FTSLLNAADV 240 AEETASAFRG VVFSQPPDQN HNSSPLLQNQ FNLFQDGLLH TYSYSNVNTT GVNQSSECNE 300 ISTVGTANGN NYPFSSLISP NLQLQPSPAS FKVPDYRMQL PMPAPHYYQI SQPRPLGDSS 360 NMSPFSTPQW SNQRTLQHDP TLFVRNPQWS NQIILQQNPT AVGQNALQRT SYQGLFSSFD 420 RMDSMYPDSR SPAFIPRPPH LQMNRQSMGG LNNGPNLSLD LQGLFANNSP RKAPWEDDFD 480 LRRASYQNGN TAPNNTDSPA SILIPDPRPI GNALYSPEYA HMGLAIDPHI RNLQEIMAED 540 IKETSKETND D*

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MVKKIEQLKL IENEPSRQIC FAKRRNGLMK KALELHMVCD VDSIVIAFSP AGRLSFFCGG  60
NRRVEDIIRH FAALPEDIRG FQIPDPELWV LLETLDKLKE QTKEHIQNDS TNDLGDQTCV  120
VVKQQELTAK DNEDASQEMP DAMNGAETSS PKPVDVVQQA EPEHQVNENS NENQHQSPTA  180
EGIQDALMRQ SSPSKHLPPE VASPNLLPEV ASPDLLPVVA IPNPQHAGTS FTSLLNAADV  240
AEETASAFRG VVFSQPPDQN HNSSPLLQNQ FNLFQDGLLH TYSYSNVNTT GVNQSSECNE  300
ISTVGTANGN NYPFSSLISP NLQLQPSPAS FKVPDYRMQL PMPAPHYYQI SQPRPLGDSS  360
NMSPFSTPQW SNQRTLQHDP TLFVRNPQWS NQIILQQNPT AVGQNALQRT SYQGLFSSFD  420
RMDSMYPDSR SPAFIPRPPH LQMNRQSMGG LNNGPNLSLD LQGLFANNSP RKAPWEDDFD  480
LRRASYQNGN TAPNNTDSPA SILIPDPRPI GNALYSPEYA HMGLAIDPHI RNLQEIMAED  540
IKETSKETND D*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	9e-19	MIKC_MADS family protein