PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AUR62000319-RA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium
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Family | C3H | ||||||||
Protein Properties | Length: 396aa MW: 43170.5 Da PI: 8.7279 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 36.7 | 7.2e-12 | 28 | 52 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+f++rtG C++G++C+F+H+ AUR62000319-RA 28 GEPDCSFYLRTGLCRFGSTCRFNHP 52 6899********************8 PP | |||||||
2 | zf-CCCH | 32 | 2.2e-10 | 58 | 77 | 8 | 27 |
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 ++++tGtCk+G++CkF+H++ AUR62000319-RA 58 YYLKTGTCKFGATCKFNHPK 77 8*****************96 PP | |||||||
3 | zf-CCCH | 38 | 2.7e-12 | 99 | 123 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ AUR62000319-RA 99 EPECAYYLRTGQCKFGSTCKFHHPQ 123 799********************97 PP | |||||||
4 | zf-CCCH | 38.1 | 2.6e-12 | 257 | 283 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G+ C+F+H++ AUR62000319-RA 257 PGQPECQYYMKTGDCKFGAVCRFHHPR 283 5789*********************96 PP | |||||||
5 | zf-CCCH | 40.3 | 5.3e-13 | 303 | 329 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ AUR62000319-RA 303 PGEPLCIFYSRYGICKFGPNCKFDHPM 329 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence |
SMWPVNMRSS EALDTGIYPP GPYPEREGEP DCSFYLRTGL CRFGSTCRFN HPSNRKLYYL 60 KTGTCKFGAT CKFNHPKDKA GIAGRVPVNV LGYPLRPNEP ECAYYLRTGQ CKFGSTCKFH 120 HPQPSASFRG SSVYPPVQSP TTPGQHSYPG GLTNWSLSRA SIIPSPRWQG PSSYTPLILP 180 QGVVSVPGWN AYMGQMGSVS SPEGQQQTSG NSPGYGTARQ SESVVAASQG AYSSYRSGSI 240 PMGYYALQRD NVFPERPGQP ECQYYMKTGD CKFGAVCRFH HPRERLVPAP DCLLSALGLP 300 LRPGEPLCIF YSRYGICKFG PNCKFDHPMG IFAYNVSPTS TDASAMRRYL GSSSAAGLTL 360 TSEGLVESGT GKNRRLSLSE TRDLQSGDDD VETDR* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-147 | C3H family protein |