PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62000119-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 696aa MW: 75617 Da PI: 6.0382

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62000119-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.1	1.3e-07	273	293	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC++Gd C +aHg AUR62000119-RA 273 PCPEFRK-GTCRRGDMCEYAHG 293 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 696 aa Download sequence
MDVKTSNSSE IFEAKISFSE LLELAADNDV EGFKQCIETK PNVIDEIGLW YGRQLGARGM 60 VLEYRTPLMV ASMYGSLDVM KFILSLSEVD VNCACGPDKC TALHCAASGG SLDAVDAVKL 120 LVANGADPNL VDAKGNRPCD VITVSQMLPQ LQVALEDMLN CHDSTDQKDL RDLGNGLKVA 180 PLVIPTLSEN KSISSGLEAP SSPMSAKKEY PVDPSLPDIK NSIYATDDFR MYSFKIRPCS 240 RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPEFRKG TCRRGDMCEY AHGVFECWLH 300 PAQYRTRLCK DGTSCNRRVC FFAHTPEELR PLYASTGSAV PSPRSVASAA VMDMAAALNL 360 FPGSPSAASA MSPSPFTPPL SPSGNGISHS AGWQQQNIPT LHLPGSNIQA NNIQSSRLRS 420 SLNARDIPAE ELSMLQDMEQ RHILNDMSCF AHGNLSARPK SLAPSNLDEL FSAEISSPRY 480 SDPLAASVFS PSHKSAVFNH FQQQQQSMLS PINTKVFSPK PVDHSLLQPS FGPSSPGMMS 540 SPRGIDPQSS FNARLSVLAL RDKHQQMRSL SARDLGANLP RDLIPETGGI SGSPVNVGSW 600 SKWEFSTNGR ADWSINGDEL THLKRSYTVG NNGEEPDLSW VQSLVKDSPS SENKEVPSNA 660 VSGSMLCADG SNSNSQEQSV DHSTLGAWLD QIAAQ*

Sequence ? help Back to Top

Protein Sequence Length: 696 aa Download sequence

MDVKTSNSSE IFEAKISFSE LLELAADNDV EGFKQCIETK PNVIDEIGLW YGRQLGARGM  60
VLEYRTPLMV ASMYGSLDVM KFILSLSEVD VNCACGPDKC TALHCAASGG SLDAVDAVKL  120
LVANGADPNL VDAKGNRPCD VITVSQMLPQ LQVALEDMLN CHDSTDQKDL RDLGNGLKVA  180
PLVIPTLSEN KSISSGLEAP SSPMSAKKEY PVDPSLPDIK NSIYATDDFR MYSFKIRPCS  240
RAYSHDWTEC PFVHPGENAR RRDPRKFHYS CVPCPEFRKG TCRRGDMCEY AHGVFECWLH  300
PAQYRTRLCK DGTSCNRRVC FFAHTPEELR PLYASTGSAV PSPRSVASAA VMDMAAALNL  360
FPGSPSAASA MSPSPFTPPL SPSGNGISHS AGWQQQNIPT LHLPGSNIQA NNIQSSRLRS  420
SLNARDIPAE ELSMLQDMEQ RHILNDMSCF AHGNLSARPK SLAPSNLDEL FSAEISSPRY  480
SDPLAASVFS PSHKSAVFNH FQQQQQSMLS PINTKVFSPK PVDHSLLQPS FGPSSPGMMS  540
SPRGIDPQSS FNARLSVLAL RDKHQQMRSL SARDLGANLP RDLIPETGGI SGSPVNVGSW  600
SKWEFSTNGR ADWSINGDEL THLKRSYTVG NNGEEPDLSW VQSLVKDSPS SENKEVPSNA  660
VSGSMLCADG SNSNSQEQSV DHSTLGAWLD QIAAQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	0.0	C3H family protein