PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62000095-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

AP2

Protein Properties

Length: 568aa MW: 61658.3 Da PI: 6.6617

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62000095-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	31.2	5.3e-10	173	229	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+ ++ a+ k++g AUR62000095-RA 173 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARSYDLAAIKYWG 229 57*****************5444.2455536655.779999************98 PP
2	AP2	47.8	3.5e-15	272	323	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g AUR62000095-RA 272 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 323 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 568 aa Download sequence
MSSMNSNNWL SFPLSPTHPS HLQSTNSQPH QQFSLGLVSD IDNPFGQAQE WNLLNSQGAN 60 EVPKIADFLG VGKSESHHDS PDLSAFSDMG QGSESDYLFS GNNGLLAVQN TVAAASNTSE 120 YDQYQDNSNN CLQSLTTAAT GAASTAATVT TAITPVVEAT PRRTLDTFGQ RTSIYRGVTR 180 HRWTGRYEAH LWDNSCRREG QSRKGRQGGY DKEEKAARSY DLAAIKYWGT STTTNFPISN 240 YEKEVEDMKH MTRQEFVAAI RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY 300 LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKAI LESNTLPIGG GAAKRLKEAQ 360 AIESSRKREE MLALSNSTYP YRASSSTSSR YGAHQQATHA YPLLPYHQQD TQPQPLLTLQ 420 NNHGQESNNN ISLSHYSQEA QFLQLYQQSS YSNPSIMYNN YLQTNPSLLH GFMNMGSNSG 480 VIDTNNNGSS SGSYSGGAYL GGGAGINGMG SASSTSNPVG AGDTEPLALV KVDYDMPSAG 540 GGGGSYAGWS TETVQGPNNG VFAMWND*

Sequence ? help Back to Top

Protein Sequence Length: 568 aa Download sequence

MSSMNSNNWL SFPLSPTHPS HLQSTNSQPH QQFSLGLVSD IDNPFGQAQE WNLLNSQGAN  60
EVPKIADFLG VGKSESHHDS PDLSAFSDMG QGSESDYLFS GNNGLLAVQN TVAAASNTSE  120
YDQYQDNSNN CLQSLTTAAT GAASTAATVT TAITPVVEAT PRRTLDTFGQ RTSIYRGVTR  180
HRWTGRYEAH LWDNSCRREG QSRKGRQGGY DKEEKAARSY DLAAIKYWGT STTTNFPISN  240
YEKEVEDMKH MTRQEFVAAI RRKSSGFSRG ASIYRGVTRH HQHGRWQARI GRVAGNKDLY  300
LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF DMSRYDVKAI LESNTLPIGG GAAKRLKEAQ  360
AIESSRKREE MLALSNSTYP YRASSSTSSR YGAHQQATHA YPLLPYHQQD TQPQPLLTLQ  420
NNHGQESNNN ISLSHYSQEA QFLQLYQQSS YSNPSIMYNN YLQTNPSLLH GFMNMGSNSG  480
VIDTNNNGSS SGSYSGGAYL GGGAGINGMG SASSTSNPVG AGDTEPLALV KVDYDMPSAG  540
GGGGSYAGWS TETVQGPNNG VFAMWND*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein