PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

AUR62000047-RA

Organism

Chenopodium quinoa

Taxonomic ID

63459

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Atripliceae; Chenopodium

Family

C3H

Protein Properties

Length: 300aa MW: 31466.5 Da PI: 9.8226

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
AUR62000047-RA	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.3	5.4e-08	102	127	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt++C+ f CkyGd+C+FaHg+ AUR62000047-RA 102 KTKICNKFNSPEGCKYGDKCHFAHGE 127 899999999999************96 PP
2	zf-CCCH	34.8	2.8e-11	266	290	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +f + G C +GdrC+FaHg AUR62000047-RA 266 FKTRLCENFTK-GSCTFGDRCHFAHG 290 79*******.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MDFGGPRKRG RPEASLNGNG GFKKSRPESE SFQSGVGSKS KPCTKFFSTS GCPFGEGCHF 60 LHHVPGGFKA VSQMLNLGGA PVPPPRNVAP SYSDGPATPS GKTKICNKFN SPEGCKYGDK 120 CHFAHGERQL GRPSIPSYED PRGMGYMSGR MGGMMEPPPP GLGAAANFGE SSTAKLSIDA 180 ALAGAVIGKS GINSKQICRV TGVKLSIRDH ETDSNKRNIQ LEGTFDQIKQ ASSMVEELIR 240 NVKAASGGPP VRQATGHGAP GGGSNFKTRL CENFTKGSCT FGDRCHFAHG ADEMRKSAI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	4e-56	C3H family protein