PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554698.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARR-B

Protein Properties

Length: 514aa MW: 57747.4 Da PI: 6.5062

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554698.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.5	1.2e-27	277	330	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++W+peLH++Fv+aveqL G+++A+P++ilelmkv+gLt+++v+SHLQkYR+ XP_023554698.1 277 KSKVDWSPELHKKFVQAVEQL-GIDHAIPSKILELMKVEGLTRHNVASHLQKYRT 330 6799***************.******************************8 PP
2	Myb_DNA-binding	44.2	4.6e-14	280	329	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 W++e+++++v+av+qlG + +++I + m +g+t+ ++ s++qky+ XP_023554698.1 280 VDWSPELHKKFVQAVEQLGIDhaIPSKILELMKvEGLTRHNVASHLQKYR 329 57***********************************************7 PP
3	Response_reg	28.1	1e-10	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d + + ++ +r+ le+ +y +v +++d +eal + + +++ +l + + d e +k + + +++lpii+ ++ +++++++ +G XP_023554698.1 20 VLLLDHDSSSASEIRSKLEEMEY-VVYSCTDEKEALSAILNTPgnFHVAILEVCARNYD--ESFKLLGA-SMDLPIIMTSDVHCLSTMVKCIALG 110 78999999999**********.***********777767****999976..66777744.458****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp ++++l++ XP_023554698.1 111 AVEFLLKPLSEDKLRN 126 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence
MVCTVDDLQE WKDFPKGLRV LLLDHDSSSA SEIRSKLEEM EYVVYSCTDE KEALSAILNT 60 PGNFHVAILE VCARNYDESF KLLGASMDLP IIMTSDVHCL STMVKCIALG AVEFLLKPLS 120 EDKLRNIWQH VLHKAFSNTP KPDEHSEASL MQLQLENKDR NEVPEEMEML SWIQDIVWEP 180 PEGSEKSQLN LGESLQGSWE SGHQMNCSME TDSREKDVYS KFVETATHDL VCEGPFQEGQ 240 PRLSGKNKSD VKSSASAAEH SIQGSDVNHS AGSKAKKSKV DWSPELHKKF VQAVEQLGID 300 HAIPSKILEL MKVEGLTRHN VASHLQKYRT QKKHIMHREE NPWWSHPRCT IQTNHLKPIM 360 AYPSYHPNCG ISLSPVFPTW RQTNSHPGNA RPPGFCHWPR PGIQPWNSYA GVQADAWGCP 420 VTLPSHAPYF AHPQHVSSAS HNMHTVNKSY GMPQSSFDLQ PDEEVVDKVV KEAMRKPFSP 480 LPLGLKPATE RVLTELSMQG ISIVPPQING SRPP

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence

MVCTVDDLQE WKDFPKGLRV LLLDHDSSSA SEIRSKLEEM EYVVYSCTDE KEALSAILNT  60
PGNFHVAILE VCARNYDESF KLLGASMDLP IIMTSDVHCL STMVKCIALG AVEFLLKPLS  120
EDKLRNIWQH VLHKAFSNTP KPDEHSEASL MQLQLENKDR NEVPEEMEML SWIQDIVWEP  180
PEGSEKSQLN LGESLQGSWE SGHQMNCSME TDSREKDVYS KFVETATHDL VCEGPFQEGQ  240
PRLSGKNKSD VKSSASAAEH SIQGSDVNHS AGSKAKKSKV DWSPELHKKF VQAVEQLGID  300
HAIPSKILEL MKVEGLTRHN VASHLQKYRT QKKHIMHREE NPWWSHPRCT IQTNHLKPIM  360
AYPSYHPNCG ISLSPVFPTW RQTNSHPGNA RPPGFCHWPR PGIQPWNSYA GVQADAWGCP  420
VTLPSHAPYF AHPQHVSSAS HNMHTVNKSY GMPQSSFDLQ PDEEVVDKVV KEAMRKPFSP  480
LPLGLKPATE RVLTELSMQG ISIVPPQING SRPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-93	ARR-B family protein