PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023554549.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 562aa    MW: 62454.5 Da    PI: 6.3258
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023554549.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.53.1e-942025613374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     e +++ A++++s+d++laq +L+rl+++ +s++g+p+qR+a++f+eAL++ l+       +  + + +s+ + ++++ a+k+fs +sPi+ fsh+
  XP_023554549.1 202 EDIVRTADCFDSNDFQLAQVILERLNQRlQSSTGKPLQRAAFFFKEALQSLLSA------SNRHNRLSSWPEIVHTIRAYKVFSAISPIPMFSHF 290
                     568899*********************99************************9......4555566666669********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                     t+Nqa+lea++g++ +Hi+Dfdi+ G+Q++++++++a+++e+    pp lRiT+v+++e   + e + ++e+L +fA+ l+++f+++++  +++e
  XP_023554549.1 291 TTNQALLEALNGSSFIHIVDFDIGFGGQYASFMKEIAEKAESrkmiPPVLRITAVVPEE--FAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFE 383
                     *************************************9996556679**********65..8889999********************9999*** PP

            GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklprese 280
                     +l++++ ++ +gE+ a+ l  +++r l   +s++s + ++L+ v+++sP vvv+v+ e  +d +++sF + ++++le+y+++++sl+a + +  +
  XP_023554549.1 384 TLSFKSVKFMEGEKAAILLTPAIFRRL---GSINS-IGSFLSDVRRVSPCVVVFVDGEgwSDSGAASFKRNLVDSLEFYAMMLESLDAAV-AGGD 473
                     ***************************...66666.777*******************77788999**********************98.5557 PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     + + +E ++++++i  +v  +g++       +  Wre ++ aG++pv+ls++a  qa++ll kv+++g++v +++++lvl+W++rpLv++SaWr
  XP_023554549.1 474 WVRRIETFVFRPKILAAVEGAGRM------AAPPWREVFHGAGMRPVALSQFADFQAECLLGKVQVQGFQVGKRHAELVLCWHERPLVATSAWR 561
                     77889*************999998......799************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    
MRVPVSNHQL PSSSPNPKLN SSPSAIAIAT PTPTPTSTPN ITNPCYEPTS VLDLRRSPSP  60
VAPDPHTLSS APLLPSDDRP NVNNNNNNNN NNNPSLDWDE QALHNLDWDS IMGDLGLHDD  120
SNSAPKNPNP NPNPNPNPNP NNNNHVPQFP DFLHSHPFDH QTHLVSPDFF LSEPPYSNHT  180
PTFNSFDLAA PNSNNSSCEF LEDIVRTADC FDSNDFQLAQ VILERLNQRL QSSTGKPLQR  240
AAFFFKEALQ SLLSASNRHN RLSSWPEIVH TIRAYKVFSA ISPIPMFSHF TTNQALLEAL  300
NGSSFIHIVD FDIGFGGQYA SFMKEIAEKA ESRKMIPPVL RITAVVPEEF AIESRLIREN  360
LCQFAQDLKI RFHIDLVPLR TFETLSFKSV KFMEGEKAAI LLTPAIFRRL GSINSIGSFL  420
SDVRRVSPCV VVFVDGEGWS DSGAASFKRN LVDSLEFYAM MLESLDAAVA GGDWVRRIET  480
FVFRPKILAA VEGAGRMAAP PWREVFHGAG MRPVALSQFA DFQAECLLGK VQVQGFQVGK  540
RHAELVLCWH ERPLVATSAW RC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-151GRAS family protein