PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023554549.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | GRAS | ||||||||
Protein Properties | Length: 562aa MW: 62454.5 Da PI: 6.3258 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 307.5 | 3.1e-94 | 202 | 561 | 3 | 374 |
GRAS 3 elLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 e +++ A++++s+d++laq +L+rl+++ +s++g+p+qR+a++f+eAL++ l+ + + + +s+ + ++++ a+k+fs +sPi+ fsh+ XP_023554549.1 202 EDIVRTADCFDSNDFQLAQVILERLNQRlQSSTGKPLQRAAFFFKEALQSLLSA------SNRHNRLSSWPEIVHTIRAYKVFSAISPIPMFSHF 290 568899*********************99************************9......4555566666669********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187 t+Nqa+lea++g++ +Hi+Dfdi+ G+Q++++++++a+++e+ pp lRiT+v+++e + e + ++e+L +fA+ l+++f+++++ +++e XP_023554549.1 291 TTNQALLEALNGSSFIHIVDFDIGFGGQYASFMKEIAEKAESrkmiPPVLRITAVVPEE--FAIESRLIRENLCQFAQDLKIRFHIDLVPLRTFE 383 *************************************9996556679**********65..8889999********************9999*** PP GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklprese 280 +l++++ ++ +gE+ a+ l +++r l +s++s + ++L+ v+++sP vvv+v+ e +d +++sF + ++++le+y+++++sl+a + + + XP_023554549.1 384 TLSFKSVKFMEGEKAAILLTPAIFRRL---GSINS-IGSFLSDVRRVSPCVVVFVDGEgwSDSGAASFKRNLVDSLEFYAMMLESLDAAV-AGGD 473 ***************************...66666.777*******************77788999**********************98.5557 PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + + +E ++++++i +v +g++ + Wre ++ aG++pv+ls++a qa++ll kv+++g++v +++++lvl+W++rpLv++SaWr XP_023554549.1 474 WVRRIETFVFRPKILAAVEGAGRM------AAPPWREVFHGAGMRPVALSQFADFQAECLLGKVQVQGFQVGKRHAELVLCWHERPLVATSAWR 561 77889*************999998......799************************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 562 aa Download sequence |
MRVPVSNHQL PSSSPNPKLN SSPSAIAIAT PTPTPTSTPN ITNPCYEPTS VLDLRRSPSP 60 VAPDPHTLSS APLLPSDDRP NVNNNNNNNN NNNPSLDWDE QALHNLDWDS IMGDLGLHDD 120 SNSAPKNPNP NPNPNPNPNP NNNNHVPQFP DFLHSHPFDH QTHLVSPDFF LSEPPYSNHT 180 PTFNSFDLAA PNSNNSSCEF LEDIVRTADC FDSNDFQLAQ VILERLNQRL QSSTGKPLQR 240 AAFFFKEALQ SLLSASNRHN RLSSWPEIVH TIRAYKVFSA ISPIPMFSHF TTNQALLEAL 300 NGSSFIHIVD FDIGFGGQYA SFMKEIAEKA ESRKMIPPVL RITAVVPEEF AIESRLIREN 360 LCQFAQDLKI RFHIDLVPLR TFETLSFKSV KFMEGEKAAI LLTPAIFRRL GSINSIGSFL 420 SDVRRVSPCV VVFVDGEGWS DSGAASFKRN LVDSLEFYAM MLESLDAAVA GGDWVRRIET 480 FVFRPKILAA VEGAGRMAAP PWREVFHGAG MRPVALSQFA DFQAECLLGK VQVQGFQVGK 540 RHAELVLCWH ERPLVATSAW RC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36710.1 | 1e-151 | GRAS family protein |