PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023554528.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 363aa    MW: 39940.6 Da    PI: 6.8113
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023554528.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.73.1e-06115135526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++f+r G C +Gd C FaHg
  XP_023554528.1 115 MCPDFRR-GGCDRGDGCEFAHG 135
                     6******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    
MSSVCAEQQK FQFQFQLPSS CSKILEDING EMCSDSPRFS FAVESLLQKF LPFNGEDVAE  60
EDGDPYSSDH FRMYEFKVWR CTRSRSHDWT DCPFAHPGEK ARRRDPRRFH YSGTMCPDFR  120
RGGCDRGDGC EFAHGVFECW LHPARYRTEA CKDGKNCKRK VCFFAHSPRE LRLLPPVSNF  180
QGGSCSSPNK RSSTLRSAAA GSNHGCLFCH CGGAATSSPT STLIGMSHLS PPLSPPLSPV  240
KPQSLNGFSP ISRYNPDPSK LNGVISYKDS MTELMNSIES MNIDELNAAL AASASRQTIP  300
WIDVSSLNTE DQLQFVLSPS TPNVSAASVN FSVNNKGNAD NGWASASASA SDPDLGWVND  360
LLM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.13e-74C3H family protein