PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554494.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 411aa MW: 44879.8 Da PI: 5.4803

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554494.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	17	1.2e-05	4	44	5	39
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ +++++ +C+++ lC +C + H+ H++ XP_023554494.1 4 MCDFCGQQRSFVYCRSDAAALCLSCDRNVHSAnalsrrHSR 44 6*****************************65677777766 PP
2	CCT	62.3	1.5e-21	354	397	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R a++RYkeK+k RkFeKk+rY+sRK++A++R RvKGrFvk+ XP_023554494.1 354 RSDAVMRYKEKKKARKFEKKVRYASRKVRADTRRRVKGRFVKAG 397 889**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MGYMCDFCGQ QRSFVYCRSD AAALCLSCDR NVHSANALSR RHSRTLLCDR CHSQAAFVRC 60 PEENISLCQN CDYMGHSSSA SISSRKRQPI NCYSDCPTAA ELSSIWSFVL DLPSGSDACE 120 QELGLMSIAE NSAVNAWGPD DKAGQNASGV DETNEFSSGD KSIWFGSSSA PQYLSKPHIM 180 DQPITPGASS PKLHYPGTKG PDFDIDDDLY ESLNMDEDLN IENYEELFGV SLSYSEELLE 240 NGGIDSLFRI KSLAAAKSGC AGATDAKGPS GLANNMIQPA SSNAASADSV MSAKTDPILC 300 YNNKQEHSSR SFSGMTGESS AGEHQDCGAS SMLLMGEPPW CSMATESSFQ SSNRSDAVMR 360 YKEKKKARKF EKKVRYASRK VRADTRRRVK GRFVKAGEAY DYDPMSQTRS Y

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MGYMCDFCGQ QRSFVYCRSD AAALCLSCDR NVHSANALSR RHSRTLLCDR CHSQAAFVRC  60
PEENISLCQN CDYMGHSSSA SISSRKRQPI NCYSDCPTAA ELSSIWSFVL DLPSGSDACE  120
QELGLMSIAE NSAVNAWGPD DKAGQNASGV DETNEFSSGD KSIWFGSSSA PQYLSKPHIM  180
DQPITPGASS PKLHYPGTKG PDFDIDDDLY ESLNMDEDLN IENYEELFGV SLSYSEELLE  240
NGGIDSLFRI KSLAAAKSGC AGATDAKGPS GLANNMIQPA SSNAASADSV MSAKTDPILC  300
YNNKQEHSSR SFSGMTGESS AGEHQDCGAS SMLLMGEPPW CSMATESSFQ SSNRSDAVMR  360
YKEKKKARKF EKKVRYASRK VRADTRRRVK GRFVKAGEAY DYDPMSQTRS Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07650.2	1e-127	CO-like family protein