PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023554488.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 421aa    MW: 47266.9 Da    PI: 5.2874
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023554488.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.94.6e-94444142373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalkl..fsevsPilkf 93 
                     ++lLl+cA a++s+d +laq++++ l++ asp gdp+qRl+  f++AL +r +r +++   +  + + +s++  ++ +++++l  ++++ P+++f
  XP_023554488.1  44 EKLLLHCASALESHDVTLAQQVMWVLNNVASPVGDPNQRLTCWFLRALISRASRVCPTPTPTPmNFNGSSTRIDTRFMSVTELarYVDLIPWYRF 138
                     689***************************************************7766554441555555444555566666699********** PP

            GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvlvakr 185
                     ++ +aN aI++a++++ +vHi+Df+is+++QWp+L++aL++Rp+gppslRiT+ +   s+    + +++++g  L+kfA++ ++pf+fnv + ++
  XP_023554488.1 139 GFCAANIAIYKAIQRCPKVHILDFSISHCMQWPTLIDALSKRPQGPPSLRITVPSFRPSVpplLNISTQQIGLCLSKFANSKNIPFQFNV-IDNH 232
                     ****************************************************99986666889999***********************9.6999 PP

            GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++++++L+++++Eal++n+++ l ++ld++ +     d+++++ ksl+P+++vvv++++d++++s++ r++ +++y++  fd+le+ lp++s 
  XP_023554488.1 233 NTSIDPSSLSLEEDEALVINCQHWLRYMLDDEEEE----DDFINATKSLNPRIMVVVDEDSDMSDSSLASRITTCFNYFWIPFDALETFLPKDSA 323
                     999**************************655544....56****************************************************** PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +r  +E+  +g++i+n++  eg++r+er e+  k +er+++ G+ +vp+ ++++++ k+ll++ +  g+ ++ e+++lvl+Wk+++ v+v+aW
  XP_023554488.1 324 QRLEYEAD-IGQRIQNIIGFEGQQRVERLESCVKVSERMRNGGYLNVPFCDDVEAELKALLAEQA-SGWGMKREEDTLVLTWKGHNSVFVTAW 414
                     ********.******************************************************99.88999999******************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 421 aa     Download sequence    
MRAELKGKTS SISVHNSTIL NTPHTSLSGA LKGCLGSLDG GCIEKLLLHC ASALESHDVT  60
LAQQVMWVLN NVASPVGDPN QRLTCWFLRA LISRASRVCP TPTPTPMNFN GSSTRIDTRF  120
MSVTELARYV DLIPWYRFGF CAANIAIYKA IQRCPKVHIL DFSISHCMQW PTLIDALSKR  180
PQGPPSLRIT VPSFRPSVPP LLNISTQQIG LCLSKFANSK NIPFQFNVID NHNTSIDPSS  240
LSLEEDEALV INCQHWLRYM LDDEEEEDDF INATKSLNPR IMVVVDEDSD MSDSSLASRI  300
TTCFNYFWIP FDALETFLPK DSAQRLEYEA DIGQRIQNII GFEGQQRVER LESCVKVSER  360
MRNGGYLNVP FCDDVEAELK ALLAEQASGW GMKREEDTLV LTWKGHNSVF VTAWVTDELA  420
R
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-102GRAS family protein