PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554341.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-other

Protein Properties

Length: 1674aa MW: 187896 Da PI: 6.0243

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554341.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59	8e-19	19	75	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+++ ++yps++ r+eL+ klgL++rq ++WF+ rR k++k XP_023554341.1 19 KTKRKMKTASQLEILEKAYMGEPYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRK 75 6799***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1674 aa Download sequence
MEVSSEGEKK PPPPVEATKT KRKMKTASQL EILEKAYMGE PYPSEALRAE LSVKLGLSDR 60 QLQMWFCHRR LKDRKPPPVK RPRMPSPTMT VAADVNPVGG SGEKNESTSG LGKGSNAYAH 120 PVDVRPGVAV ARIGLNLPSM NRFYGSQQSI AELRAIALVE AQLGEALRED GPILGMEFDP 180 LPPGAFGAPI GVTAVSDDEK KTGQFFEVSK QRDIEQIEHH QMSGRTLHEY QFLPEQPTAK 240 SDEHERDISS YQYGTHANVH SISRTLPMAS GHSFLHGHEQ MSSSYCSQVQ MPNLSIVAQQ 300 SRRSHNLLSS MGEHDNSLCR SSLVNISMNP LYGTHSTAHP EFTSILSDKR VVRGNNVVWI 360 EKKSKNDEAR IAREVEAHEK KMQKELEKQD ALRRKREDQI RKEMERHDRE RRREEERLLR 420 EKQKEEERCL REQRREMLRR EKFLHRESIR AERIRQKEAL RREREAARLK AANQRAAARQ 480 MAKESTELAE DERLELMELA VSSKGLPSIM SLDQETLENL ELFKDMRPNF PPESVQMKRP 540 FPDHPWIESE ANVGNLLMAW KFLVTFAEVL GLWPFTLDEF LQAFHDHDSR LLGEVHIAVL 600 KCIIKDIEDV ARTSSIGLGF NQSSGANPGG GHLRIVEGAY AWGFDICSWQ QHLNPLTWPE 660 ILRQLALSGG LGPQQRKGGN AEPAHHDENE QGNDAADIIS NLRNGLAAEK AVAIMQERGF 720 SNQRKSRHRL TPGTVKFAAF HVLSLEGSKG LNIVEVANKI QKSGLRDLTT SRTPEASIAA 780 ALSRDSKLFE RTAPSTYCVR SPYRKDPGNA DAVLSTARER IRTFKSGILD GDDAERDDGS 840 EVDVPEDAEV HDLGTGGNLT KQHQSPEVCP LDEMTSVASG NGCNEIRDIC KVGMENGGPY 900 TSILDIKGDH GEPWVQGLTE GEYSDLSVEE RLNALCSLIG VALEGNSMRI VLEERLEAAN 960 SLKKQMLAEA QIDKRRIKEE YVLQIHDSSS VGNKSEFKTT SSLDATRLSA ILNIGEENRE 1020 GPLDTGFQQE DCHSSHNNCP SEGLQVQDVL VVADNSQLQH SVVAVEKSRS QVKSYIGHKA 1080 EEMYVYRSLP LGQDRRRNRY WQFTSSASRN EPGNGRIFVE LHNGSWRLID SPKGFDALLA 1140 SLDVRGIRES HLHLMLQKLE KSFKTATRGN ILQDSQRTGE DAAGQHCNAH NNGPSSTVYA 1200 DNHDGFESST SFRSEAEETG SDTTESLKRY LDFESWMRRE CFNLSVLSAN KHGKKQGTQL 1260 LENIGLSWCS SSPLRIRLLK MLLTLIEVSI PGEAFQPSWT DFERKTWSSK LLSSSSAEDV 1320 LQILTLLENG IKRDFMWSNY ETTYELLACV NPPGNYTCHS SFPETVPVLP WIPLTTAAVA 1380 LRLLEFDTSL SYSLQQKAES QAQGSMDIKP LSDSATAVIS NEHVKEANLI YGGVGPLSSD 1440 YGQLDSKRGH GRIRGGKSHK RTNSMRPVSD KSTGNNRKIL RQVLMWEDGQ VEEQGGFRRG 1500 RRSARSRQKS GRKIKFGSEG GHPEETINET SKLSLDNSHE WNDDQNTRML QRSDGSPSSS 1560 DRLISIDNSG RVEYDDMLVD DRARSWQAGY LPTSRSYEID EDREDDLSAD GERGNTMDEE 1620 YKEYDLSDGG RGNVMDEERD LYVEHYTDGE YNEESNRNLE DNMELQSASS DYSN

Sequence ? help Back to Top

Protein Sequence Length: 1674 aa Download sequence

MEVSSEGEKK PPPPVEATKT KRKMKTASQL EILEKAYMGE PYPSEALRAE LSVKLGLSDR  60
QLQMWFCHRR LKDRKPPPVK RPRMPSPTMT VAADVNPVGG SGEKNESTSG LGKGSNAYAH  120
PVDVRPGVAV ARIGLNLPSM NRFYGSQQSI AELRAIALVE AQLGEALRED GPILGMEFDP  180
LPPGAFGAPI GVTAVSDDEK KTGQFFEVSK QRDIEQIEHH QMSGRTLHEY QFLPEQPTAK  240
SDEHERDISS YQYGTHANVH SISRTLPMAS GHSFLHGHEQ MSSSYCSQVQ MPNLSIVAQQ  300
SRRSHNLLSS MGEHDNSLCR SSLVNISMNP LYGTHSTAHP EFTSILSDKR VVRGNNVVWI  360
EKKSKNDEAR IAREVEAHEK KMQKELEKQD ALRRKREDQI RKEMERHDRE RRREEERLLR  420
EKQKEEERCL REQRREMLRR EKFLHRESIR AERIRQKEAL RREREAARLK AANQRAAARQ  480
MAKESTELAE DERLELMELA VSSKGLPSIM SLDQETLENL ELFKDMRPNF PPESVQMKRP  540
FPDHPWIESE ANVGNLLMAW KFLVTFAEVL GLWPFTLDEF LQAFHDHDSR LLGEVHIAVL  600
KCIIKDIEDV ARTSSIGLGF NQSSGANPGG GHLRIVEGAY AWGFDICSWQ QHLNPLTWPE  660
ILRQLALSGG LGPQQRKGGN AEPAHHDENE QGNDAADIIS NLRNGLAAEK AVAIMQERGF  720
SNQRKSRHRL TPGTVKFAAF HVLSLEGSKG LNIVEVANKI QKSGLRDLTT SRTPEASIAA  780
ALSRDSKLFE RTAPSTYCVR SPYRKDPGNA DAVLSTARER IRTFKSGILD GDDAERDDGS  840
EVDVPEDAEV HDLGTGGNLT KQHQSPEVCP LDEMTSVASG NGCNEIRDIC KVGMENGGPY  900
TSILDIKGDH GEPWVQGLTE GEYSDLSVEE RLNALCSLIG VALEGNSMRI VLEERLEAAN  960
SLKKQMLAEA QIDKRRIKEE YVLQIHDSSS VGNKSEFKTT SSLDATRLSA ILNIGEENRE  1020
GPLDTGFQQE DCHSSHNNCP SEGLQVQDVL VVADNSQLQH SVVAVEKSRS QVKSYIGHKA  1080
EEMYVYRSLP LGQDRRRNRY WQFTSSASRN EPGNGRIFVE LHNGSWRLID SPKGFDALLA  1140
SLDVRGIRES HLHLMLQKLE KSFKTATRGN ILQDSQRTGE DAAGQHCNAH NNGPSSTVYA  1200
DNHDGFESST SFRSEAEETG SDTTESLKRY LDFESWMRRE CFNLSVLSAN KHGKKQGTQL  1260
LENIGLSWCS SSPLRIRLLK MLLTLIEVSI PGEAFQPSWT DFERKTWSSK LLSSSSAEDV  1320
LQILTLLENG IKRDFMWSNY ETTYELLACV NPPGNYTCHS SFPETVPVLP WIPLTTAAVA  1380
LRLLEFDTSL SYSLQQKAES QAQGSMDIKP LSDSATAVIS NEHVKEANLI YGGVGPLSSD  1440
YGQLDSKRGH GRIRGGKSHK RTNSMRPVSD KSTGNNRKIL RQVLMWEDGQ VEEQGGFRRG  1500
RRSARSRQKS GRKIKFGSEG GHPEETINET SKLSLDNSHE WNDDQNTRML QRSDGSPSSS  1560
DRLISIDNSG RVEYDDMLVD DRARSWQAGY LPTSRSYEID EDREDDLSAD GERGNTMDEE  1620
YKEYDLSDGG RGNVMDEERD LYVEHYTDGE YNEESNRNLE DNMELQSASS DYSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	23	KKPPPPVEATKTKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein