PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554340.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-other

Protein Properties

Length: 1707aa MW: 191477 Da PI: 5.8415

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.9	8.2e-19	19	75	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + kR t++qle+Le+++ ++yps++ r+eL+ klgL++rq ++WF+ rR k++k XP_023554340.1 19 KTKRKMKTASQLEILEKAYMGEPYPSEALRAELSVKLGLSDRQLQMWFCHRRLKDRK 75 6799***************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1707 aa Download sequence
MEVSSEGEKK PPPPVEATKT KRKMKTASQL EILEKAYMGE PYPSEALRAE LSVKLGLSDR 60 QLQMWFCHRR LKDRKPPPVK RPRMPSPTMT VAADVNPVGG SGEKNESTSG LGKGSNAYAH 120 PVDVRPGVAV ARIGLNLPSM NRFYGSQQSI AELRAIALVE AQLGEALRED GPILGMEFDP 180 LPPGAFGAPI GVTAVSDDEK KTGQFFEVSK QRDIEQIEHH QMSGRTLHEY QFLPEQPTAK 240 SDEHERDISS YQYGTHANVH SISRTLPMAS GHSFLHGHEQ MSSSYCSQVQ MPNLSIVAQQ 300 SRRSHNLLSS MGEHDNSLCR SSLVNISMNP LYGTHSTAHP EFTSILSDKR VVRGNNVVWI 360 EKKSKNDEAR IAREVEAHEK KMQKELEKQD ALRRKREDQI RKEMERHDRE RRREEERLLR 420 EKQKEEERCL REQRREMLRR EKFLHRESIR AERIRQKEAL RREREAARLK AANQRAAARQ 480 MAKESTELAE DERLELMELA VSSKGLPSIM SLDQETLENL ELFKDMRPNF PPESVQMKRP 540 FPDHPWIESE ANVGNLLMAW KFLVTFAEVL GLWPFTLDEF LQAFHDHDSR LLGEVHIAVL 600 KCIIKDIEDV ARTSSIGLGF NQSSGANPGG GHLRIVEGAY AWGFDICSWQ QHLNPLTWPE 660 ILRQLALSGG LGPQQRKGGN AEPAHHDENE QGNDAADIIS NLRNGLAAEK AVAIMQERGF 720 SNQRKSRHRL TPGTVKFAAF HVLSLEGSKG LNIVEVANKI QKSGLRDLTT SRTPEASIAA 780 ALSRDSKLFE RTAPSTYCVR SPYRKDPGNA DAVLSTARER IRTFKSGILD GDDAERDDGS 840 EVDVPEDAEV HDLGTGGNLT KQHQSPEVCP LDEMTSVASG NGCNEIRDIC KVGMENGGPY 900 TSILDIKGRV KGEESPPVEQ PIYISGICTG QYQEDSTSDE GDHGEPWVQG LTEGEYSDLS 960 VEERLNALCS LIGVALEGNS MRIVLEERLE AANSLKKQML AEAQIDKRRI KEEYVLQIHD 1020 SSSVGNKSEF KTTSSLDATR LSAILNIGEE NREGPLDTGF QQEDCHSSHN NCPSEGLQVQ 1080 DVLVVADNSQ LQHSVVAVEK SRSQVKSYIG HKAEEMYVYR SLPLGQDRRR NRYWQFTSSA 1140 SRNEPGNGRI FVELHNGSWR LIDSPKGFDA LLASLDVRGI RESHLHLMLQ KLEKSFKTAT 1200 RGNILQDSQR TGEDAAGQHC NAHNNGPSST VYADNHDGFE SSTSFRSEAE ETGSDTTESL 1260 KRYLDFESWM RRECFNLSVL SANKHGKKQG TQLLENIGLS WCSSSPLRIR LLKMLLTLIE 1320 VSIPGEAFQP SWTDFERKTW SSKLLSSSSA EDVLQILTLL ENGIKRDFMW SNYETTYELL 1380 ACVNPPGNYT CHSSFPETVP VLPWIPLTTA AVALRLLEFD TSLSYSLQQK AESQAQGSMD 1440 IKPLSDSATA VISNEHVKEA NLIYGGVGPL SSDYGQLDSK RGHGRIRGGK SHKRTNSMRP 1500 VSDKSTGNNR KILRQVLMWE DGQVEEQGGF RRGRRSARSR QKSGRKIKFG SEGGHPEETI 1560 NETSKLSLDN SHEWNDDQNT RMLQRSDGSP SSSDRLISID NSGRVEYDDM LVDDRARSWQ 1620 AGYLPTSRSY EIDEDREDDL SADGERGNTM DEEYKEYDLS DGGRGNVMDE ERDLYVEHYT 1680 DGEYNEESNR NLEDNMELQS ASSDYSN

Sequence ? help Back to Top

Protein Sequence Length: 1707 aa Download sequence

MEVSSEGEKK PPPPVEATKT KRKMKTASQL EILEKAYMGE PYPSEALRAE LSVKLGLSDR  60
QLQMWFCHRR LKDRKPPPVK RPRMPSPTMT VAADVNPVGG SGEKNESTSG LGKGSNAYAH  120
PVDVRPGVAV ARIGLNLPSM NRFYGSQQSI AELRAIALVE AQLGEALRED GPILGMEFDP  180
LPPGAFGAPI GVTAVSDDEK KTGQFFEVSK QRDIEQIEHH QMSGRTLHEY QFLPEQPTAK  240
SDEHERDISS YQYGTHANVH SISRTLPMAS GHSFLHGHEQ MSSSYCSQVQ MPNLSIVAQQ  300
SRRSHNLLSS MGEHDNSLCR SSLVNISMNP LYGTHSTAHP EFTSILSDKR VVRGNNVVWI  360
EKKSKNDEAR IAREVEAHEK KMQKELEKQD ALRRKREDQI RKEMERHDRE RRREEERLLR  420
EKQKEEERCL REQRREMLRR EKFLHRESIR AERIRQKEAL RREREAARLK AANQRAAARQ  480
MAKESTELAE DERLELMELA VSSKGLPSIM SLDQETLENL ELFKDMRPNF PPESVQMKRP  540
FPDHPWIESE ANVGNLLMAW KFLVTFAEVL GLWPFTLDEF LQAFHDHDSR LLGEVHIAVL  600
KCIIKDIEDV ARTSSIGLGF NQSSGANPGG GHLRIVEGAY AWGFDICSWQ QHLNPLTWPE  660
ILRQLALSGG LGPQQRKGGN AEPAHHDENE QGNDAADIIS NLRNGLAAEK AVAIMQERGF  720
SNQRKSRHRL TPGTVKFAAF HVLSLEGSKG LNIVEVANKI QKSGLRDLTT SRTPEASIAA  780
ALSRDSKLFE RTAPSTYCVR SPYRKDPGNA DAVLSTARER IRTFKSGILD GDDAERDDGS  840
EVDVPEDAEV HDLGTGGNLT KQHQSPEVCP LDEMTSVASG NGCNEIRDIC KVGMENGGPY  900
TSILDIKGRV KGEESPPVEQ PIYISGICTG QYQEDSTSDE GDHGEPWVQG LTEGEYSDLS  960
VEERLNALCS LIGVALEGNS MRIVLEERLE AANSLKKQML AEAQIDKRRI KEEYVLQIHD  1020
SSSVGNKSEF KTTSSLDATR LSAILNIGEE NREGPLDTGF QQEDCHSSHN NCPSEGLQVQ  1080
DVLVVADNSQ LQHSVVAVEK SRSQVKSYIG HKAEEMYVYR SLPLGQDRRR NRYWQFTSSA  1140
SRNEPGNGRI FVELHNGSWR LIDSPKGFDA LLASLDVRGI RESHLHLMLQ KLEKSFKTAT  1200
RGNILQDSQR TGEDAAGQHC NAHNNGPSST VYADNHDGFE SSTSFRSEAE ETGSDTTESL  1260
KRYLDFESWM RRECFNLSVL SANKHGKKQG TQLLENIGLS WCSSSPLRIR LLKMLLTLIE  1320
VSIPGEAFQP SWTDFERKTW SSKLLSSSSA EDVLQILTLL ENGIKRDFMW SNYETTYELL  1380
ACVNPPGNYT CHSSFPETVP VLPWIPLTTA AVALRLLEFD TSLSYSLQQK AESQAQGSMD  1440
IKPLSDSATA VISNEHVKEA NLIYGGVGPL SSDYGQLDSK RGHGRIRGGK SHKRTNSMRP  1500
VSDKSTGNNR KILRQVLMWE DGQVEEQGGF RRGRRSARSR QKSGRKIKFG SEGGHPEETI  1560
NETSKLSLDN SHEWNDDQNT RMLQRSDGSP SSSDRLISID NSGRVEYDDM LVDDRARSWQ  1620
AGYLPTSRSY EIDEDREDDL SADGERGNTM DEEYKEYDLS DGGRGNVMDE ERDLYVEHYT  1680
DGEYNEESNR NLEDNMELQS ASSDYSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	9	23	KKPPPPVEATKTKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	HB-other family protein