PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554322.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 495aa MW: 54313 Da PI: 5.5485

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554322.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.6e-13	351	397	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_023554322.1 351 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 397 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MGEKFWANEE NRVLVESVLG SEACEFLISL ASSNIIPPEA FQLSSVNQGL TQLLDGSNWN 60 YAIFWRVVTL KSGGLALIWG DGACHDSKIG IQISGGDTQG EKNEEMKKQV LQMLQSSFGG 120 SDEDGFGARK EEASDIDMLY RTSMYYKFTC DSGSSLGASY NAGKTIWASD SSSCMHNYES 180 RGFLAKVAGL QTLVFVPVKL GVVELGSVKS IPEDQGVLEL VRAAFGGSDT AQLRAFPRIF 240 GHELSLGGAK TRALGINFSP KLEDETNFPS EGYELQGLGA NHMFGNSSNG CRGDDSDAKM 300 HPAQEIVGGF TAQTRLSTME LPRDESSPQG DDRKPRKRGR KPANGREEPL NHVEAERQRR 360 EKLNQRFYAL RAVVPNISKM DKASLLGDAI TYITDLQMKV KVMETEKQIV NGRVKNAEID 420 FQAREEDAVV RVSCPLDSHP VSRVIKTFRE HQIEAHESNV TTSTDNDKVI HSFSIRTEGG 480 AAEQLKEKLV AALSN

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MGEKFWANEE NRVLVESVLG SEACEFLISL ASSNIIPPEA FQLSSVNQGL TQLLDGSNWN  60
YAIFWRVVTL KSGGLALIWG DGACHDSKIG IQISGGDTQG EKNEEMKKQV LQMLQSSFGG  120
SDEDGFGARK EEASDIDMLY RTSMYYKFTC DSGSSLGASY NAGKTIWASD SSSCMHNYES  180
RGFLAKVAGL QTLVFVPVKL GVVELGSVKS IPEDQGVLEL VRAAFGGSDT AQLRAFPRIF  240
GHELSLGGAK TRALGINFSP KLEDETNFPS EGYELQGLGA NHMFGNSSNG CRGDDSDAKM  300
HPAQEIVGGF TAQTRLSTME LPRDESSPQG DDRKPRKRGR KPANGREEPL NHVEAERQRR  360
EKLNQRFYAL RAVVPNISKM DKASLLGDAI TYITDLQMKV KVMETEKQIV NGRVKNAEID  420
FQAREEDAVV RVSCPLDSHP VSRVIKTFRE HQIEAHESNV TTSTDNDKVI HSFSIRTEGG  480
AAEQLKEKLV AALSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	333	341	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-156	bHLH family protein