PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554321.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 545aa MW: 60075.6 Da PI: 6.0541

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554321.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	9.8e-13	401	447	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_023554321.1 401 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 447 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MYSSEKNPIP CFSSVFWTKL RRPSITISDS ALISADFRSS GVWISSYFWK MGEKFWANEE 60 NRVLVESVLG SEACEFLISL ASSNIIPPEA FQLSSVNQGL TQLLDGSNWN YAIFWRVVTL 120 KSGGLALIWG DGACHDSKIG IQISGGDTQG EKNEEMKKQV LQMLQSSFGG SDEDGFGARK 180 EEASDIDMLY RTSMYYKFTC DSGSSLGASY NAGKTIWASD SSSCMHNYES RGFLAKVAGL 240 QTLVFVPVKL GVVELGSVKS IPEDQGVLEL VRAAFGGSDT AQLRAFPRIF GHELSLGGAK 300 TRALGINFSP KLEDETNFPS EGYELQGLGA NHMFGNSSNG CRGDDSDAKM HPAQEIVGGF 360 TAQTRLSTME LPRDESSPQG DDRKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL 420 RAVVPNISKM DKASLLGDAI TYITDLQMKV KVMETEKQIV NGRVKNAEID FQAREEDAVV 480 RVSCPLDSHP VSRVIKTFRE HQIEAHESNV TTSTDNDKVI HSFSIRTEGG AAEQLKEKLV 540 AALSN

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MYSSEKNPIP CFSSVFWTKL RRPSITISDS ALISADFRSS GVWISSYFWK MGEKFWANEE  60
NRVLVESVLG SEACEFLISL ASSNIIPPEA FQLSSVNQGL TQLLDGSNWN YAIFWRVVTL  120
KSGGLALIWG DGACHDSKIG IQISGGDTQG EKNEEMKKQV LQMLQSSFGG SDEDGFGARK  180
EEASDIDMLY RTSMYYKFTC DSGSSLGASY NAGKTIWASD SSSCMHNYES RGFLAKVAGL  240
QTLVFVPVKL GVVELGSVKS IPEDQGVLEL VRAAFGGSDT AQLRAFPRIF GHELSLGGAK  300
TRALGINFSP KLEDETNFPS EGYELQGLGA NHMFGNSSNG CRGDDSDAKM HPAQEIVGGF  360
TAQTRLSTME LPRDESSPQG DDRKPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL  420
RAVVPNISKM DKASLLGDAI TYITDLQMKV KVMETEKQIV NGRVKNAEID FQAREEDAVV  480
RVSCPLDSHP VSRVIKTFRE HQIEAHESNV TTSTDNDKVI HSFSIRTEGG AAEQLKEKLV  540
AALSN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	383	391	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	1e-155	bHLH family protein