PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554313.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 625aa MW: 68826.2 Da PI: 4.7868

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554313.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	459	504	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L XP_023554313.1 459 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 504 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 625 aa Download sequence
MTDYRLPQAM NLWADENASM MDVFTSTDLS SLWVTPPLPQ PQPQPQPQPQ PLYSSVSTAI 60 EPSKPVGQEP PAPPPSLAVF NQETLMQRLQ VLIEGAQESW TYAIFWQSSY YSGSNLLGWG 120 DGYYKGEEDK EKAKSSTSKT EQERRKTVLR ELNSLISGSP ASDDDAVDEV VTDTEWFFLV 180 SMTQSFVSGV GLPGQAFLDS NPIWISGSDR LASSFCERAR QGQIFGLQTM VCIPLVNGVV 240 ELGSSDLIFL NSELMNRVRV LFNFNNLEAE TWPISGENDP SLWITEPLSN AIEIKGAIET 300 PSSSVPPPPQ KSNRQPQPVQ KQSFLTPKEL NFSEFGFENG SLKAESGEIL NFSGTKRNSH 360 PNTDNILPSS NLGGGGGGGG DENKKKTSSN EEGMLSFTSG VILPSSGTAK STGCIVDSDH 420 SDLEASVIRE VESNRAVEPE KRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA 480 VVPNVSKMDK ASLLGDAISY INELKGKLQT AESDKEELQK QLDSVKKFIS SSDQDVKASN 540 YGIETDIDVK IISWDAMIRI QSSKKNHPAA RLMAALEELD LDISHASISV VNDLMIQQAT 600 VKMGSRLYTQ EQLRIALSSK MAAAR

Sequence ? help Back to Top

Protein Sequence Length: 625 aa Download sequence

MTDYRLPQAM NLWADENASM MDVFTSTDLS SLWVTPPLPQ PQPQPQPQPQ PLYSSVSTAI  60
EPSKPVGQEP PAPPPSLAVF NQETLMQRLQ VLIEGAQESW TYAIFWQSSY YSGSNLLGWG  120
DGYYKGEEDK EKAKSSTSKT EQERRKTVLR ELNSLISGSP ASDDDAVDEV VTDTEWFFLV  180
SMTQSFVSGV GLPGQAFLDS NPIWISGSDR LASSFCERAR QGQIFGLQTM VCIPLVNGVV  240
ELGSSDLIFL NSELMNRVRV LFNFNNLEAE TWPISGENDP SLWITEPLSN AIEIKGAIET  300
PSSSVPPPPQ KSNRQPQPVQ KQSFLTPKEL NFSEFGFENG SLKAESGEIL NFSGTKRNSH  360
PNTDNILPSS NLGGGGGGGG DENKKKTSSN EEGMLSFTSG VILPSSGTAK STGCIVDSDH  420
SDLEASVIRE VESNRAVEPE KRPRKRGRKP ANGREEPLNH VEAERQRREK LNQRFYALRA  480
VVPNVSKMDK ASLLGDAISY INELKGKLQT AESDKEELQK QLDSVKKFIS SSDQDVKASN  540
YGIETDIDVK IISWDAMIRI QSSKKNHPAA RLMAALEELD LDISHASISV VNDLMIQQAT  600
VKMGSRLYTQ EQLRIALSSK MAAAR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	441	449	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	1e-179	bHLH family protein