PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554174.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GATA

Protein Properties

Length: 516aa MW: 57973.8 Da PI: 6.2353

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554174.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	45.1	1.4e-14	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+++TplWR+gp ++ LCnaCG ++r kg+ XP_023554174.1 7 CCHCGVISTPLWRNGPPDKPVLCNACGSRWRTKGT 41 99************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence
MGKHGPCCHC GVISTPLWRN GPPDKPVLCN ACGSRWRTKG TLTNYTPLHA RTVPDEYEDH 60 RASRVKSISI NKNKEVKLLK RKLQQADGSI AWTLPDQGQD YHRVVDEDTS NRSSSGSAIS 120 NPESCAHFSS ADASDLTGPA QSVVWETTVP SRKRTCVTRP KQSPVEKLTK DLCSILREQR 180 SSYFSEASED DLLFESEKPM VSVEIGHGSI LIRHPSSIAR DEESEASSVS VDNKQYLIND 240 IYSPHSATVL VCSEQQEQFN RDESRHECLQ VLGNHDSPLC DVDINDVVNF GEFARRLTNE 300 EQQQLMKYLP QVDIAEFPET VKRMFDSPYF KENLMSFQQL LSEGVFDASF LGTKIEDCKT 360 LRRLVLSNSS KSKWVELYQQ LKKCENGSKE PFLSRANTSV SSNYMNVDES YNQTIPEVKT 420 IMKSPKRLVM KENKDPGEND GSCFSPTSLF ALPPDGSYDM FDCLHFVEER SDHGLLLEVR 480 SNSSFPQAEL LHPTSRSGGR QASTCSSSVH PHLVHH

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence

MGKHGPCCHC GVISTPLWRN GPPDKPVLCN ACGSRWRTKG TLTNYTPLHA RTVPDEYEDH  60
RASRVKSISI NKNKEVKLLK RKLQQADGSI AWTLPDQGQD YHRVVDEDTS NRSSSGSAIS  120
NPESCAHFSS ADASDLTGPA QSVVWETTVP SRKRTCVTRP KQSPVEKLTK DLCSILREQR  180
SSYFSEASED DLLFESEKPM VSVEIGHGSI LIRHPSSIAR DEESEASSVS VDNKQYLIND  240
IYSPHSATVL VCSEQQEQFN RDESRHECLQ VLGNHDSPLC DVDINDVVNF GEFARRLTNE  300
EQQQLMKYLP QVDIAEFPET VKRMFDSPYF KENLMSFQQL LSEGVFDASF LGTKIEDCKT  360
LRRLVLSNSS KSKWVELYQQ LKKCENGSKE PFLSRANTSV SSNYMNVDES YNQTIPEVKT  420
IMKSPKRLVM KENKDPGEND GSCFSPTSLF ALPPDGSYDM FDCLHFVEER SDHGLLLEVR  480
SNSSFPQAEL LHPTSRSGGR QASTCSSSVH PHLVHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-145	GATA family protein