PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023554149.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 522aa MW: 57250.4 Da PI: 7.7293 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 33.4 | 7.5e-11 | 165 | 189 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++ t tCk+Gd+CkF H+ XP_023554149.1 165 GEKDCAHYMLTRTCKFGDSCKFDHP 189 7889********************8 PP | |||||||
2 | zf-CCCH | 35.6 | 1.5e-11 | 217 | 242 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++f++t Ck+G+rCkF+H++ XP_023554149.1 217 GEPDCPYFLKTQRCKFGSRCKFNHPR 242 5799********************96 PP | |||||||
3 | zf-CCCH | 29.5 | 1.3e-09 | 264 | 288 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++lC f+ +tG Ck+ +CkF+H++ XP_023554149.1 264 EPLCAFYVKTGNCKFRVNCKFHHPK 288 79*********************96 PP | |||||||
4 | zf-CCCH | 36.9 | 6.2e-12 | 341 | 366 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+++tG CkyG +C+++H+ XP_023554149.1 341 PGEVDCPFYLKTGSCKYGTTCRYNHP 366 57899********************9 PP | |||||||
5 | zf-CCCH | 40.9 | 3.3e-13 | 421 | 444 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + +C+++++tG Ck+G+rCkF+H+ XP_023554149.1 421 QIECDYYMKTGDCKFGERCKFHHP 444 568********************8 PP | |||||||
6 | zf-CCCH | 40.4 | 4.7e-13 | 473 | 495 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+++++tGtCkyG++CkF H+p XP_023554149.1 473 ICPYYLKTGTCKYGSTCKFDHPP 495 6********************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence |
MANQLHGYSS VYGAGPATST ATATATTPLP AAYSSSRSLS DIVSGRYLVS DSLASGFSIK 60 HSFIDRGTTM YSTQNEALRL SAADIVPRTS HSVSQFSWPG SDAATALDSV VSGIQRSSDV 120 LYDQTVLGSY NTLGQSEAWY TSNSLAKRPR FESTSNLHVY PQRPGEKDCA HYMLTRTCKF 180 GDSCKFDHPI WVPDGGIPDW KEVPQITSSE DLPERLGEPD CPYFLKTQRC KFGSRCKFNH 240 PRDTSESVGA EKSDVSSLPE RPSEPLCAFY VKTGNCKFRV NCKFHHPKDI QILSGEVNGN 300 SEQTLMEANT EGRIGDFKLV KPPVSFSPAL IHNSKGLPIR PGEVDCPFYL KTGSCKYGTT 360 CRYNHPDRNA INPSTPAMVS AANMNIGISN PSNAIYQAVD PRLIQPLLGS SSSIYPRRPG 420 QIECDYYMKT GDCKFGERCK FHHPIDRSAA MQASQHNVKL TLAGLPRRED AIICPYYLKT 480 GTCKYGSTCK FDHPPPGEVM AMVAVQLVPG KEGEERIDEP TS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 0.0 | C3H family protein |