PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554098.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 526aa MW: 57678.6 Da PI: 4.7664

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554098.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	52.1	1.2e-16	315	361	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P + K++Ka++L +A+eY+ksLq XP_023554098.1 315 VHNLSERRRRDRINEKMKALQELIPRC-----NKVDKASMLDEAIEYLKSLQ 361 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence
MNHCVPDFER DEDFSLSNSS VQLRFKTSSM SDGEVMELLW QNGQVIMQNQ NQKSRTKSPP 60 STTADQITSG DNQPLQQDEP PQLFMQEDEM ISWLHYPLVD DSTLENSFCN ELLYHSDPQS 120 IDQNDGVSSQ IRTSHGVEFQ PLTTTATSTM AARPPIPPMR RTEPETEVNN FGLFSRFTPT 180 VESPPSNSKS IVRESPVVGS TSSNTTVLTL ESTASELQRT ATADASIGDL ACAVMSGGGV 240 AATSTGNGVG LMKMIGGETE SIQRTMSLED RKRKGKEMDD SDYQCYSPDV EFEATDVKKQ 300 ARGSTSTKRS RAAEVHNLSE RRRRDRINEK MKALQELIPR CNKVDKASML DEAIEYLKSL 360 QLQVQIMSMG CGMVPMMFPG VQQFMPPMGM GLGMGMGMGM ETGVNRPMMP YPNMLAGPMF 420 PRQSGAAQLG PTFSFPAFNM AHQNSRIQET NQSNQLHSLP GMKNINPPGA SSSLDGYQQF 480 LGSQQMPAPA AVSQPSRQNQ PANQQNSGGL ENIDNHEPGS PTMDPC

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence

MNHCVPDFER DEDFSLSNSS VQLRFKTSSM SDGEVMELLW QNGQVIMQNQ NQKSRTKSPP  60
STTADQITSG DNQPLQQDEP PQLFMQEDEM ISWLHYPLVD DSTLENSFCN ELLYHSDPQS  120
IDQNDGVSSQ IRTSHGVEFQ PLTTTATSTM AARPPIPPMR RTEPETEVNN FGLFSRFTPT  180
VESPPSNSKS IVRESPVVGS TSSNTTVLTL ESTASELQRT ATADASIGDL ACAVMSGGGV  240
AATSTGNGVG LMKMIGGETE SIQRTMSLED RKRKGKEMDD SDYQCYSPDV EFEATDVKKQ  300
ARGSTSTKRS RAAEVHNLSE RRRRDRINEK MKALQELIPR CNKVDKASML DEAIEYLKSL  360
QLQVQIMSMG CGMVPMMFPG VQQFMPPMGM GLGMGMGMGM ETGVNRPMMP YPNMLAGPMF  420
PRQSGAAQLG PTFSFPAFNM AHQNSRIQET NQSNQLHSLP GMKNINPPGA SSSLDGYQQF  480
LGSQQMPAPA AVSQPSRQNQ PANQQNSGGL ENIDNHEPGS PTMDPC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	320	325	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G20180.2	4e-75	bHLH family protein