PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023554009.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 1508aa MW: 167757 Da PI: 6.6985

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023554009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.9	0.0015	1393	1418	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ykC C +sF +k +L H r+ + XP_023554009.1 1393 YKCDleGCRMSFETKVELALHKRNqC 1418 99********************9876 PP
2	zf-C2H2	11.2	0.0012	1476	1502	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H XP_023554009.1 1476 YKCKveGCGLSFRFVSDYSRHRRKtgH 1502 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1508 aa Download sequence
MGGVEIPKWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PFPKPSKKYV 60 ISNLNKSLSR SSELSRDLNA SSVRSSSKLG STDGANEREV RAVFTTRHQE LGQSVRKTKG 120 VVQNPQFGVH KQVWQSGEVY TLEQFESKSK VFARSVLGGI KEPSPLVVES LFWKAATEKP 180 IYVEYANDVP GSAFGEPEGK FRYFHRRRRK RNYYNRKERS SELKSGEMET LTETLARDSR 240 GTSTRDNLNT SAEMLKPSTS TVSSEDASHN SRGKSSDSCI NMEGTAGWRL SNSPWNLQVI 300 ARSPGSLTRY MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSMNFLHVG SPKTWYSIPG 360 DHAFAFEEVV RTQAYGGSVD HLAALTLLGE KTSLLSPETV IASGIRCCRL IQNPGEFVVT 420 FPRAYHVGFS HGFNCGEAAN FGTPQWLSVA KDAAVRRAAM NYLPMLSHQQ LLYLLTMSFV 480 SRVPRSLLPG VRSSRLRDRQ KEEREFMVKK GFVEDILREN NMLSVLLEKE SSCRAVLWNP 540 DMLPYLSHSQ VANTNSAVAT SPRENTSCNH IESLDRNDKN VQNFIDEMAL DLESMNDIYL 600 DSDDLSCDFQ VDSGTLACVA CGILGFPFMS VVQPSEKASR ELSGDHLSTH KRGGVLGSKD 660 VHCSPHFDGT HPEDSTSVPD VNCLSKDPSV GSVPKFDKGW NTFSKFLRPR SFCLLHAVDT 720 VELLQKKGGA NILVICHSDY HKIKANAVAI AEEIGHNFVY NEVRLDIASE EDLGLIDLAV 780 DEERDECRED WTSRLGINLR HCVKVRKSSP TKQVQHALAL GGLFLNRDHG FDLSNLNWPA 840 KRSRSKKINH LQHSKRFQSM HMHLKEEVSG EKSDSRIAKQ QEKFFQYYRR NKKSGNSTGV 900 SSVTQPASSG DSSDLCNDRS FRSNASELAI PDPTGTTDQQ DAVLQDCGNT NSISTVGRMT 960 EPQMENCLPE EAYIDGELPV DDSGMQQYIT AALDTSEPNK NAVLPSCTVG PLVNAINESF 1020 ELPQDQELLE SRNKTDQECD IASEEQSHAP AGVCSDEVNL AESTGLHCSI VLESSKVVLD 1080 SEDVKNSSSE ACDGMTRDET AIADGIKGMD EDSCSLIPIK LQLCPDTEGH SQFGHLDDRT 1140 NTGTPDAATS NLRDRTSEVS RMACEGPDLC NAATSDGLLN NLQTFDADVE TRSVSGVEVQ 1200 LKAQLSSCLA DEKSIKNLGS QEDVDNLSDA LMSSTGVQNE TPTEPRIPMD KPGFKSCILG 1260 ESPMDVETGG EASDRKNLTG GKAPGIDSPL TQSKTRDATE ICSLKHKPSS DVEKRRKRKR 1320 HDELRIENEL SSFDFIRSPC EGLRPRAIKN LTHQRDIDVN ISVQEKPESK RVRKPSDNVS 1380 PKPKKGIRRK GSYKCDLEGC RMSFETKVEL ALHKRNQCPH EGCGKRFSSH KYAMLHQRVH 1440 DDDRPLKCPW KGCSMSFKWA WARTEHIRVH TGERPYKCKV EGCGLSFRFV SDYSRHRRKT 1500 GHYVDQPT

Sequence ? help Back to Top

Protein Sequence Length: 1508 aa Download sequence

MGGVEIPKWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA SAFGICKIIP PFPKPSKKYV  60
ISNLNKSLSR SSELSRDLNA SSVRSSSKLG STDGANEREV RAVFTTRHQE LGQSVRKTKG  120
VVQNPQFGVH KQVWQSGEVY TLEQFESKSK VFARSVLGGI KEPSPLVVES LFWKAATEKP  180
IYVEYANDVP GSAFGEPEGK FRYFHRRRRK RNYYNRKERS SELKSGEMET LTETLARDSR  240
GTSTRDNLNT SAEMLKPSTS TVSSEDASHN SRGKSSDSCI NMEGTAGWRL SNSPWNLQVI  300
ARSPGSLTRY MPDDIPGVTS PMVYIGMLFS WFAWHVEDHE LHSMNFLHVG SPKTWYSIPG  360
DHAFAFEEVV RTQAYGGSVD HLAALTLLGE KTSLLSPETV IASGIRCCRL IQNPGEFVVT  420
FPRAYHVGFS HGFNCGEAAN FGTPQWLSVA KDAAVRRAAM NYLPMLSHQQ LLYLLTMSFV  480
SRVPRSLLPG VRSSRLRDRQ KEEREFMVKK GFVEDILREN NMLSVLLEKE SSCRAVLWNP  540
DMLPYLSHSQ VANTNSAVAT SPRENTSCNH IESLDRNDKN VQNFIDEMAL DLESMNDIYL  600
DSDDLSCDFQ VDSGTLACVA CGILGFPFMS VVQPSEKASR ELSGDHLSTH KRGGVLGSKD  660
VHCSPHFDGT HPEDSTSVPD VNCLSKDPSV GSVPKFDKGW NTFSKFLRPR SFCLLHAVDT  720
VELLQKKGGA NILVICHSDY HKIKANAVAI AEEIGHNFVY NEVRLDIASE EDLGLIDLAV  780
DEERDECRED WTSRLGINLR HCVKVRKSSP TKQVQHALAL GGLFLNRDHG FDLSNLNWPA  840
KRSRSKKINH LQHSKRFQSM HMHLKEEVSG EKSDSRIAKQ QEKFFQYYRR NKKSGNSTGV  900
SSVTQPASSG DSSDLCNDRS FRSNASELAI PDPTGTTDQQ DAVLQDCGNT NSISTVGRMT  960
EPQMENCLPE EAYIDGELPV DDSGMQQYIT AALDTSEPNK NAVLPSCTVG PLVNAINESF  1020
ELPQDQELLE SRNKTDQECD IASEEQSHAP AGVCSDEVNL AESTGLHCSI VLESSKVVLD  1080
SEDVKNSSSE ACDGMTRDET AIADGIKGMD EDSCSLIPIK LQLCPDTEGH SQFGHLDDRT  1140
NTGTPDAATS NLRDRTSEVS RMACEGPDLC NAATSDGLLN NLQTFDADVE TRSVSGVEVQ  1200
LKAQLSSCLA DEKSIKNLGS QEDVDNLSDA LMSSTGVQNE TPTEPRIPMD KPGFKSCILG  1260
ESPMDVETGG EASDRKNLTG GKAPGIDSPL TQSKTRDATE ICSLKHKPSS DVEKRRKRKR  1320
HDELRIENEL SSFDFIRSPC EGLRPRAIKN LTHQRDIDVN ISVQEKPESK RVRKPSDNVS  1380
PKPKKGIRRK GSYKCDLEGC RMSFETKVEL ALHKRNQCPH EGCGKRFSSH KYAMLHQRVH  1440
DDDRPLKCPW KGCSMSFKWA WARTEHIRVH TGERPYKCKV EGCGLSFRFV SDYSRHRRKT  1500
GHYVDQPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1314	1320	KRRKRKR
2	1315	1320	RRKRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein