PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023553346.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 545aa    MW: 60520.4 Da    PI: 5.596
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023553346.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4271.5e-1301765442373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +e L +cA+a+ ++d+   ++l+++l+ ++s +g+p+qRl ay++eAL ar a+s+++++kal+++e      +e l+++++++e++P++kf++l
  XP_023553346.1 176 KEMLCACARAIGENDMLTGEWLVSELRGMVSVSGEPIQRLGAYLLEALIARTASSGNSICKALRCKEPI---GTEMLSYMHILYEICPYFKFGYL 267
                     789*****************************************************************9...9********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI ea++ge+rvHiiDf+i qG QW++L+qaLa+Rp+gpp++ iTg+++++s   +   le +g+rL+ +Ae+l vpfef+  +a + +++
  XP_023553346.1 268 SANGAIAEAIKGENRVHIIDFQIAQGNQWITLMQALANRPGGPPKVTITGIDDSTSAfaRGGGLEIVGKRLSLLAESLMVPFEFRG-IAGSASEI 361
                     *****************************************************99889999*************************.6999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     + e+L+v+pgEa+aV++ l lh+++desv ++++rd++L+lvkslsPkvv+vve+e++ n+++F  rfl++l+yy+a+f+s++++lpr+++eri+
  XP_023553346.1 362 QREDLKVQPGEAIAVSFTLVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTVVEHESNNNTAPFYSRFLQTLKYYTAIFESIDVTLPRDHKERIN 456
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     vE+++l+r+ivn+vacegaer+erhe l+kWr+r+ +aGFkp pls ++++++++ll+++++  y++ee++g+l+lgW +++Lv+ SaW
  XP_023553346.1 457 VEQHCLARDIVNIVACEGAERVERHELLGKWRSRFLMAGFKPHPLSPFVNATIEALLKNYSD-KYTLEERDGALYLGWLNQNLVTSSAW 544
                     *************************************************************5.5************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    
MQESSRKKVP NQSHRFYEQP PQEPGSCYWP PMNHGGGLYS DDVFEQNHLP SEAFKQYCNL  60
ESSSGTSGYP PQNSSSTASF TSNGSPSSHQ ECHSYSLDPY YSPDNNCGSP ISRSCLTDDA  120
ADDLRHKIRE LETAMLGPDT DGFDIYSVAN PVDPVLPVQE AGWKDVAEIM SRKDLKEMLC  180
ACARAIGEND MLTGEWLVSE LRGMVSVSGE PIQRLGAYLL EALIARTASS GNSICKALRC  240
KEPIGTEMLS YMHILYEICP YFKFGYLSAN GAIAEAIKGE NRVHIIDFQI AQGNQWITLM  300
QALANRPGGP PKVTITGIDD STSAFARGGG LEIVGKRLSL LAESLMVPFE FRGIAGSASE  360
IQREDLKVQP GEAIAVSFTL VLHHMPDESV GSQNHRDRIL RLVKSLSPKV VTVVEHESNN  420
NTAPFYSRFL QTLKYYTAIF ESIDVTLPRD HKERINVEQH CLARDIVNIV ACEGAERVER  480
HELLGKWRSR FLMAGFKPHP LSPFVNATIE ALLKNYSDKY TLEERDGALY LGWLNQNLVT  540
SSAWI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein