PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023553336.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 551aa MW: 60539.3 Da PI: 7.2713

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023553336.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100	1.5e-31	206	263	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkk ers+ d+++++i+Y+g+H+h+k XP_023553336.1 206 DDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSH-DGQITDIVYKGTHDHPK 263 8**************************************.*************85 PP
2	WRKY	105.3	3.2e-33	377	435	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct gCpv+k+ver+++dpk+v++tYeg+Hnh+ XP_023553336.1 377 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHD 435 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 551 aa Download sequence
MDPTEPASTA AAGAKYKLMS PAKLPIFRSP CITIPPGLSP SSFLDSPVLL TNFKVEPSPT 60 TGSFTKLPMA HDSSSSAIYP MTTMACSNAN ASDEGNSNYF EFKPYVGPNM VPADMSHRKD 120 EQSCELQVQG QPQPFTAPPM TKSEINVISN DSNRSTQMDP VASGAAVPDI DGDDFNHSLN 180 TNTRAQAAQS DPKGSGSPVV SDRISDDGYN WRKYGQKHVK GSEFPRSYYK CTHPNCEVKK 240 LFERSHDGQI TDIVYKGTHD HPKLQPSRRY SASASVKDGP DKPSPLTGQD DRSCSIYTRT 300 VHSIEPNGTP ERLAANDSNT EGAGTTLPCK NPDELDDNDI ILKRRKMELG GFEACPMVRP 360 IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTNVGCPV RKHVERASHD 420 PKAVITTYEG KHNHDVPTAK TSSHDAAGPL RTAPLRYRLE DRDTVSLDLG VGIGENRSNE 480 YRQQALAPNG NFNFEVVQEN SAPTYFSVHN RGMNQHGPRE SLSESRSVDV VPLNHSSHPY 540 PPSVGRILTG P

Sequence ? help Back to Top

Protein Sequence Length: 551 aa Download sequence

MDPTEPASTA AAGAKYKLMS PAKLPIFRSP CITIPPGLSP SSFLDSPVLL TNFKVEPSPT  60
TGSFTKLPMA HDSSSSAIYP MTTMACSNAN ASDEGNSNYF EFKPYVGPNM VPADMSHRKD  120
EQSCELQVQG QPQPFTAPPM TKSEINVISN DSNRSTQMDP VASGAAVPDI DGDDFNHSLN  180
TNTRAQAAQS DPKGSGSPVV SDRISDDGYN WRKYGQKHVK GSEFPRSYYK CTHPNCEVKK  240
LFERSHDGQI TDIVYKGTHD HPKLQPSRRY SASASVKDGP DKPSPLTGQD DRSCSIYTRT  300
VHSIEPNGTP ERLAANDSNT EGAGTTLPCK NPDELDDNDI ILKRRKMELG GFEACPMVRP  360
IREPRVVVQT LSEVDILDDG YRWRKYGQKV VRGNPNPRSY YKCTNVGCPV RKHVERASHD  420
PKAVITTYEG KHNHDVPTAK TSSHDAAGPL RTAPLRYRLE DRDTVSLDLG VGIGENRSNE  480
YRQQALAPNG NFNFEVVQEN SAPTYFSVHN RGMNQHGPRE SLSESRSVDV VPLNHSSHPY  540
PPSVGRILTG P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G26640.2	1e-174	WRKY family protein