PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023553325.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 700aa MW: 76415.3 Da PI: 6.5113

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023553325.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.6	9.6e-32	303	359	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +DgynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ +++++ei+Y+g+Hnh XP_023553325.1 303 EDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-EGHITEIIYKGTHNHV 359 7**************************************.*************6 PP
2	WRKY	103.2	1.4e-32	493	551	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gC+v+k+ver+++d k v++tYeg+Hnh+ XP_023553325.1 493 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHD 551 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence
MGRNDDNVAI IGDWVPPSPS PRTFFSAMQM LEEDVAGSRP TDKPEKLFLG SREHTVTEND 60 IARGGIPGVN SGDRSTEFGT VSEQKRGGLV ERIAARAGFN APRLNTENIR STEEVKSPYL 120 TIPPGLSPTT LLDSPVFLSN SLAQQSPTTG KFPFVANVSY RSSTMMLEAN NRGNDNPFDD 180 NSSSFAFRPS VESGSFFHGA ASKVISLPQS CPRIEVPGLR SENSYQPENR INHHPQMGLS 240 MSCTERDDGG KNVLDDQRPF DSVCGSGGGG GEHSSPLDEQ PDEGEQRGTG DSMAGGGCGA 300 PSEDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCQVKKKVE RSHEGHITEI IYKGTHNHVK 360 PSPNRRASDS HINMQQAGQQ NAEVPLWEDS QKGTPDWMHS NLEVSSSASL GPEYGNHIET 420 VEAIDASSTF SNDEDEDDRG THGSITMGYE GEGDESESKK RKLDAYVTEM SGATRAIREP 480 RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NPGCTVRKHV ERASHDLKSV 540 ITTYEGKHNH DVPAARNSSH ISSCTSSPVT GQNSTTTHAH RPGPPQSQNN MPRFERPAFG 600 LAGRQPMGTA HAHGFGFGMN QPGLRNLNLT MTMASAGQAK LPVLPMHPYL AQAHNVHEMG 660 LLLPKGEPNL EPTSDLGFNF SNGSTAYQQI MSRLPLGPEM

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence

MGRNDDNVAI IGDWVPPSPS PRTFFSAMQM LEEDVAGSRP TDKPEKLFLG SREHTVTEND  60
IARGGIPGVN SGDRSTEFGT VSEQKRGGLV ERIAARAGFN APRLNTENIR STEEVKSPYL  120
TIPPGLSPTT LLDSPVFLSN SLAQQSPTTG KFPFVANVSY RSSTMMLEAN NRGNDNPFDD  180
NSSSFAFRPS VESGSFFHGA ASKVISLPQS CPRIEVPGLR SENSYQPENR INHHPQMGLS  240
MSCTERDDGG KNVLDDQRPF DSVCGSGGGG GEHSSPLDEQ PDEGEQRGTG DSMAGGGCGA  300
PSEDGYNWRK YGQKQVKGSE YPRSYYKCTH PNCQVKKKVE RSHEGHITEI IYKGTHNHVK  360
PSPNRRASDS HINMQQAGQQ NAEVPLWEDS QKGTPDWMHS NLEVSSSASL GPEYGNHIET  420
VEAIDASSTF SNDEDEDDRG THGSITMGYE GEGDESESKK RKLDAYVTEM SGATRAIREP  480
RVVVQTTSEV DILDDGYRWR KYGQKVVKGN PNPRSYYKCT NPGCTVRKHV ERASHDLKSV  540
ITTYEGKHNH DVPAARNSSH ISSCTSSPVT GQNSTTTHAH RPGPPQSQNN MPRFERPAFG  600
LAGRQPMGTA HAHGFGFGMN QPGLRNLNLT MTMASAGQAK LPVLPMHPYL AQAHNVHEMG  660
LLLPKGEPNL EPTSDLGFNF SNGSTAYQQI MSRLPLGPEM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56270.1	1e-180	WRKY family protein