PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023553277.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | GRAS | ||||||||
Protein Properties | Length: 729aa MW: 79732.4 Da PI: 5.9781 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 325.3 | 1.2e-99 | 368 | 728 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 ++L+++Ae v +g+++ aq +Larl+++ sp g+p+qR+a+yf+eAL+ l+ ++ ++ pp+ ++ +++ ++ a+k+fse+sP+++f ++ XP_023553277.1 368 LDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLM--NNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLVQFVNF 460 679*************************************************98..6667788888888999*********************** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191 t+Nqa+lea++ r+Hi+Dfdi+ G+QW++++q+L+ R++g +sl+iT+++sp++++ el ++e+L++fA+ +g++fef+++ ++++l+ XP_023553277.1 461 TCNQALLEALDDVGRIHIVDFDIGFGAQWASFMQELSLRNQG-ASLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEMI---NFDSLNQ 551 ***************************************888.89***************************************9...5555544 PP GRAS 192 eeL.....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 +++ r +++Ea+aVn+ l ++ ++++ l+s +L+++k+lsPk+vv ++ +d+++ +F +++l+al+ y l++sl+a +s++ XP_023553277.1 552 NSFslpfsRANENEAIAVNFPL--CSTSNQPALLPS----LLRFIKQLSPKLVVSLDRGCDRSDLPFPQHMLQALQSYINLLESLDAI-NMNSDA 639 4442233344459******998..666667888887....*********************************************887.7899** PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 +k+Er+ll+++i++ v + ++ e++ W+ + +aGF+pv++s+++++qa+++ ++++++g++ve++++slvl+W++r+L+s+SaWr XP_023553277.1 640 VNKIERFLLQPRIESTVLGRLRA----PERMPLWKTLFASAGFTPVNFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWR 728 ******************99998....999**************************************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence |
MRGISFHFQG KGDLEISAAL SSSPICSGFA EKWVKKGEEH QELEEQQQGF SYFLLPNNEP 60 TSVLHMRSPS PPTSVSTLSS SFGGGGGGGG GCVPSLPPET PSVEPLAGAG VGNAIFSSGL 120 EDLESMWSET AGPEQSFLRW IAGDVEDSTI GSKNPFDLDG NAGIGIVEQG SEFGGGAGNV 180 LANINPNLSF PVPACGGANY KSSSLGMNNR HGNLNLQSPI FNGSLENLVV PVSGLIQPFE 240 RPDEKPQSLN AAQVLLNQHQ HPQNPSFFVP LMFGQQEQQL QPQLKRHNSS GALDANPNGS 300 IPIPNEILMR NHQVQVLQQQ QQQQQLGYAP GLQCLPQQKA MSPKPKVVGL GDEMAYNNPP 360 QQQQHALLDQ LYKAAELVGT GNFSHAQGIL ARLNHQLSPV GKPLQRAAFY FKEALQLLLL 420 MNNPVNPPPP RCPTPFDVIF KMGAYKVFSE ISPLVQFVNF TCNQALLEAL DDVGRIHIVD 480 FDIGFGAQWA SFMQELSLRN QGASLKITAF ASPSTHHPIE LGLMRENLTQ FANDIGISFE 540 FEMINFDSLN QNSFSLPFSR ANENEAIAVN FPLCSTSNQP ALLPSLLRFI KQLSPKLVVS 600 LDRGCDRSDL PFPQHMLQAL QSYINLLESL DAINMNSDAV NKIERFLLQP RIESTVLGRL 660 RAPERMPLWK TLFASAGFTP VNFSNFTETQ AECVAKRTSV RGFHVEKRQA SLVLCWQRRE 720 LISASAWRC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-122 | GRAS family protein |