PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023553228.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 423aa MW: 47011.4 Da PI: 6.9528

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023553228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.2	2.2e-30	196	255	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ XP_023553228.1 196 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDMSILITTYEGTHNHP 255 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence
MEIDLSLTID QEQEQEHEHE HEQVAASSSR EGLAVDINGG EISVLQMEMD RMKEENKALR 60 RAVEQTMKDY YDLETKIGII QQNNLTNKDS RNFLLFQGNE KKRHDIRNLD LDLEEMSKKK 120 RRARSPTSKE EELKERELGL SLGLHTNNKE DNHKELQEET REKNKPQRPE LLQGMAPPQN 180 RKTRVSVRAR CESATMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCLED 240 MSILITTYEG THNHPLPVGA TAMASTASAA ASFMILDSAN TNPNILNSSS YSPNPNEPSA 300 NSFYSPLMAT SSASDLPHSF FHRSFQPNHL MGSLHGRSWN PTDGNKPPLT AESVSAIASD 360 PKFRVAVAAA ISTLINKESN RTTSMPDPIE RSSSFGSGKD GDGGDGGGGN KNWVVESLSL 420 NGK

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence

MEIDLSLTID QEQEQEHEHE HEQVAASSSR EGLAVDINGG EISVLQMEMD RMKEENKALR  60
RAVEQTMKDY YDLETKIGII QQNNLTNKDS RNFLLFQGNE KKRHDIRNLD LDLEEMSKKK  120
RRARSPTSKE EELKERELGL SLGLHTNNKE DNHKELQEET REKNKPQRPE LLQGMAPPQN  180
RKTRVSVRAR CESATMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPGCPV RKQVQRCLED  240
MSILITTYEG THNHPLPVGA TAMASTASAA ASFMILDSAN TNPNILNSSS YSPNPNEPSA  300
NSFYSPLMAT SSASDLPHSF FHRSFQPNHL MGSLHGRSWN PTDGNKPPLT AESVSAIASD  360
PKFRVAVAAA ISTLINKESN RTTSMPDPIE RSSSFGSGKD GDGGDGGGGN KNWVVESLSL  420
NGK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	122	KKRHDIRNLDLDLEEMSKKKRR
2	118	122	KKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	6e-67	WRKY family protein