PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023553054.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

TCP

Protein Properties

Length: 340aa MW: 36376.9 Da PI: 7.9351

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023553054.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	114.5	1.4e-35	84	188	3	106
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaessss 80 + k++++++hTkv+gR+RR+R++a caar+F+L++eL +++d++ti WLl+ a+pai+e+tgt + XP_023553054.1 84 PVKRPSKDRHTKVEGRGRRIRMPAACAARIFQLTRELDHKSDGETIRWLLEHAEPAIIEATGTgtvpaiavsvggtlkipT-------------- 164 5699***********************************************************444444444444443331.............. PP TCP 81 sasnsssgkaaksaakskksqksaas 106 ++ ++ + s+a++kk++k+++s XP_023553054.1 165 --TSPARPNGEISEAPRKKRRKDSNS 188 ..111112112222222222222211 PP

Sequence ? help Back to Top
Protein Sequence Length: 340 aa Download sequence
MEEANQNHRL DEKEGSSNGP CQNQDSCTVD SSNLARPEGN LSDPHMEPPS TAVPKKEKEG 60 IMEHGLDIMH PLSLSQIPST VAKPVKRPSK DRHTKVEGRG RRIRMPAACA ARIFQLTREL 120 DHKSDGETIR WLLEHAEPAI IEATGTGTVP AIAVSVGGTL KIPTTSPARP NGEISEAPRK 180 KRRKDSNSES NDCNDQTTVS SGLTPIAPMA AYGAGLVPFW GSAGGVTEPF FMFPGTPNNH 240 QPQLWAVPAR PISNFVSSMN PSLQFGGVMP FLARGGVSNS SSGLESGSSP ATASAPATTS 300 GSTQMLRDFS LEIYEKKELE FMGRPSPAKP ETPCSKPSKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	185	RKKRRKD
2	180	184	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	2e-61	TCP family protein