PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552996.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARR-B
Protein Properties Length: 560aa    MW: 62200.1 Da    PI: 5.27
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552996.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.27.6e-28315368256
         G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      +++WtpeLH++Fv+aveqL G ++A+P++ilelmkv+gLt+++v+SHLQkYR++
  XP_023552996.1 315 LKVDWTPELHRKFVQAVEQL-GVNQAIPSRILELMKVEGLTRHNVASHLQKYRMH 368
                     5899****************.9*******************************96 PP
2Myb_DNA-binding43.66.8e-14317366248
                      SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 
                        WT+e++ ++v+av+qlG +   +++I + m  +g+t+ ++ s++qky+
   XP_023552996.1 317 VDWTPELHRKFVQAVEQLGVNqaIPSRILELMKvEGLTRHNVASHLQKYR 366
                      57***********************************************7 PP
3Response_reg23.62.6e-09201261109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ d + +    +r+ le+ +y +v +  +  +al  +  k   +++ ++ +  +  dG   +k +++++ +lp i+++     +++ +++ +G
  XP_023552996.1  20 VLLLDGDSSSSAEIRTKLEEMEY-VVVTYCNENDALSAISSKPdtFHVAIVEVTTSSHDGN--FKFLEAAK-DLPTIMISNIHCLSTMMKCIALG 110
                     68888889999999*********.***************776667**************95..56666655.9*******9999*********** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a +fl Kp ++++l++
  XP_023552996.1 111 AIEFLQKPLSEDKLRN 126
                     *************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 560 aa     Download sequence    
MVCTASDLQG WKDFPKGLRV LLLDGDSSSS AEIRTKLEEM EYVVVTYCNE NDALSAISSK  60
PDTFHVAIVE VTTSSHDGNF KFLEAAKDLP TIMISNIHCL STMMKCIALG AIEFLQKPLS  120
EDKLRNIWQH VVHKAFNAGG SAIPSSLKPI KESVASILHL ESENSENDNP VPKELEISNV  180
DDDNDRELLE GSDKYPAPST PQQKHGMRLV DDGDCQDQLN CLLEKECGEQ DGESKSVETT  240
CINSLGEGIS QVENTQLLDK EGIKEEENSA DGCGAASNDD HEIHDQDIIS SSEENKSKAC  300
GLGNSSGTKV SRKKLKVDWT PELHRKFVQA VEQLGVNQAI PSRILELMKV EGLTRHNVAS  360
HLQKYRMHKR HILPKQDDSS WSHSKDPMRK NSYSQRPVMA FPPPYHSNHV MPVAPIYPPW  420
GHMACPSPSV QMWVSPGYPS WQPQEIWPWK SYPGMYADAW GCPVTPPTHS PLPSHLPQQP  480
IFRFENADAH DKSYGIAFNP IELQLADEEI DKVVREAISK PWLPLPLGLK PPSTESVLSE  540
LSRQGISTVP SQINGSKLLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.31e-143ARR-B family protein