PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552986.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 281aa MW: 32061.8 Da PI: 9.6732

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552986.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0012	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++sF + L H++ H XP_023552986.1 61 HKCKLCSRSFVNGRALGGHMKAH 83 79******************998 PP
2	zf-C2H2	17.2	1.4e-05	181	203	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C ksF+++ L+ H +++ XP_023552986.1 181 FRCGKCRKSFRSNRALVGHRKVC 203 89******************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
MWMSFWWRNA CHLLISLHFQ LPQSLPSLLH LPRQRKKRSF FFFFFFFFLC FCNRATMAEG 60 HKCKLCSRSF VNGRALGGHM KAHLATFSIE HENPIKTLRS PDPEMLWIST VQDRESETES 120 KNPTRRRSKR TRRFKSESPP SSEPASSISD TSPEEDVAIC LVMLSMEQGK EQSRTPVGKS 180 FRCGKCRKSF RSNRALVGHR KVCRNEGEED GINGGEWKIF KCCYCCKVFG SGQALGGHKR 240 SHLQGSIRAA IDGSSRKLEI GLDLNLPAPL EEDDYSVVSF V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	64	RKKRSFFFFFFFFFLCFCNRATMAEGHKCK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	5e-25	C2H2 family protein