PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552954.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 366aa    MW: 41870.1 Da    PI: 7.3539
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552954.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4025.9e-12383651373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     +++lL++cA+++s++d+  a+++L+ +s ++sp+gd++qRl +yf   L++rl       +++ ++s+    +++   + +  +++++P+++f+h
  XP_023552954.1   8 MRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHRLPC-----SSSSSSSSL---QQDGLQSCYLSLNQITPFIRFCH 94 
                     589**************************************************98.....222222222...23334455666************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vak.rl 186
                     ltaNqaIlea+e + +vH++Dfdi +G+QWp+L+qaLa+R + +p+lRiT++g     + ++l +tg+rL+kfA++lg++f+f++l     + ++
  XP_023552954.1  95 LTANQAILEAIEDCGMVHVVDFDIIHGVQWPPLMQALAERFA-SPMLRITAIGL----DLTSLLKTGDRLSKFAHSLGLRFHFHPLlllN-DhDV 183
                     ****************************************65.59*********....9**************************97633.3489 PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                     + l + +L + p+EalaVn+vl lhrll+      +  +++L+ +k l+Pkvv+++e+ea+ n++ F++rfleal++ys +fdslea++p++s+e
  XP_023552954.1 184 DRLVPAALTLFPDEALAVNCVLYLHRLLK------DDVRRLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKE 272
                     9999***********************93......33457******************************************************* PP

            GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     r  vE+ ++grei +vv+ eg++rr+rhe++e+W+ +l++ GF+++pls +a +qaklllr ++ s gy+++  ++sl lgW++rpL+svS+W
  XP_023552954.1 273 RLEVEQIWFGREIDDVVSEEGNKRRQRHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYpSGGYHLQTLHDSLSLGWQNRPLFSVSSW 365
                     ****************************************************************999************************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    
MAMDPFQMRQ LLIRCAHFIS QSDFLSAHRF LSIISSNSSP YGDATQRLLH YFSSSLSHRL  60
PCSSSSSSSS LQQDGLQSCY LSLNQITPFI RFCHLTANQA ILEAIEDCGM VHVVDFDIIH  120
GVQWPPLMQA LAERFASPML RITAIGLDLT SLLKTGDRLS KFAHSLGLRF HFHPLLLLND  180
HDVDRLVPAA LTLFPDEALA VNCVLYLHRL LKDDVRRLLH KIKALNPKVV TIAEKEANFN  240
HPLFMQRFLE ALNHYSLIFD SLEATMPQNS KERLEVEQIW FGREIDDVVS EEGNKRRQRH  300
ERYESWEIML KSLGFSNIPL SPFALSQAKL LLRLHYPSGG YHLQTLHDSL SLGWQNRPLF  360
SVSSWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-118GRAS family protein