PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023552954.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | GRAS | ||||||||
Protein Properties | Length: 366aa MW: 41870.1 Da PI: 7.3539 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 402 | 5.9e-123 | 8 | 365 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 +++lL++cA+++s++d+ a+++L+ +s ++sp+gd++qRl +yf L++rl +++ ++s+ +++ + + +++++P+++f+h XP_023552954.1 8 MRQLLIRCAHFISQSDFLSAHRFLSIISSNSSPYGDATQRLLHYFSSSLSHRLPC-----SSSSSSSSL---QQDGLQSCYLSLNQITPFIRFCH 94 589**************************************************98.....222222222...23334455666************ PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl...vak.rl 186 ltaNqaIlea+e + +vH++Dfdi +G+QWp+L+qaLa+R + +p+lRiT++g + ++l +tg+rL+kfA++lg++f+f++l + ++ XP_023552954.1 95 LTANQAILEAIEDCGMVHVVDFDIIHGVQWPPLMQALAERFA-SPMLRITAIGL----DLTSLLKTGDRLSKFAHSLGLRFHFHPLlllN-DhDV 183 ****************************************65.59*********....9**************************97633.3489 PP GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281 + l + +L + p+EalaVn+vl lhrll+ + +++L+ +k l+Pkvv+++e+ea+ n++ F++rfleal++ys +fdslea++p++s+e XP_023552954.1 184 DRLVPAALTLFPDEALAVNCVLYLHRLLK------DDVRRLLHKIKALNPKVVTIAEKEANFNHPLFMQRFLEALNHYSLIFDSLEATMPQNSKE 272 9999***********************93......33457******************************************************* PP GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 r vE+ ++grei +vv+ eg++rr+rhe++e+W+ +l++ GF+++pls +a +qaklllr ++ s gy+++ ++sl lgW++rpL+svS+W XP_023552954.1 273 RLEVEQIWFGREIDDVVSEEGNKRRQRHERYESWEIMLKSLGFSNIPLSPFALSQAKLLLRLHYpSGGYHLQTLHDSLSLGWQNRPLFSVSSW 365 ****************************************************************999************************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence |
MAMDPFQMRQ LLIRCAHFIS QSDFLSAHRF LSIISSNSSP YGDATQRLLH YFSSSLSHRL 60 PCSSSSSSSS LQQDGLQSCY LSLNQITPFI RFCHLTANQA ILEAIEDCGM VHVVDFDIIH 120 GVQWPPLMQA LAERFASPML RITAIGLDLT SLLKTGDRLS KFAHSLGLRF HFHPLLLLND 180 HDVDRLVPAA LTLFPDEALA VNCVLYLHRL LKDDVRRLLH KIKALNPKVV TIAEKEANFN 240 HPLFMQRFLE ALNHYSLIFD SLEATMPQNS KERLEVEQIW FGREIDDVVS EEGNKRRQRH 300 ERYESWEIML KSLGFSNIPL SPFALSQAKL LLRLHYPSGG YHLQTLHDSL SLGWQNRPLF 360 SVSSWH |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 1e-118 | GRAS family protein |