PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552830.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 956aa MW: 106423 Da PI: 6.9813

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552830.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	26.6	1.5e-08	214	270	19	75
trihelix 19 erlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 + +++gk ++ + +ev+++++++g++r +k+ kw+n+ ++++k+ e+e++++ e+ XP_023552830.1 214 SGSGSGKTRADKDREVAEYLQKHGVNRDAKTGGTKWDNMLGEFRKVYEWERGGEREQ 270 45567788999999*************************************996555 PP

Sequence ? help Back to Top
Protein Sequence Length: 956 aa Download sequence
MGEKGEAPQQ QDYDSSSPKD PLDDSFETRP HGGGGHHHHH LHRRHHPHHD SSLIVASPFI 60 STPLYLPTAT ATTTPFEAVN PKRTRFTAGQ WKLLPSPSSS QLPIPVVGSD SSPSPSHRPT 120 GTATVAAAAA SSSDTTSSPS YSPLPSTASG QPEPAGSKGE GESQNQAQYR KGKYVSPVWK 180 PNEMLWLARA WRIQYQGGGS DDVGIVGGQG GRGSGSGSGK TRADKDREVA EYLQKHGVNR 240 DAKTGGTKWD NMLGEFRKVY EWERGGEREQ LVGKSYFRLS PYERKLHRLP ASFDEQVFEE 300 LCQFMGSKMR TKPTPLLPLT RALPPPPPFS SRSKQVFGVG YASVDASGSP THSCSSREIR 360 RIGKVRMVWE ESVSLWSEEA GEQPRGGGRI KIEGCSFLNA EDLTFFDESM VACTMESYDH 420 GPLKGLSIDR FVSGQQIKVF GRRKPPTCAT TGSHHGPPER LPLMHSTDPA ARSNTSWEYQ 480 DPTEYYVGCL RVPPTSLPSL SELSWHIQDP PSEELRLPIR KDVYAYLPQG KELMFTTTTQ 540 MLDCKSFIYE ILCPIIRTNP CITTTTSRDS FIGLWDDCIN RLVCEFCCME MRIIRKPNSP 600 STTTTNGLQD QWPNLTGFIR NFCLWRGEET DQIKDGQPHD LDPSNSIVEK LLWTYLDIPY 660 LLGYYAVGYL VTFCALSRGH DNRIIRTDLY SLDLSTPSER LKALVPCYRI AGVLSLLADG 720 CHKLPIFSDF ERIDIGKGIV MEMTPNLVTK IFSCRTKWTA VKEIYDFLDG RIPHSEFICG 780 SSDKDLAIVL KPRVCKLRPT SYEQLIEALK NVTKALVALH DLCFMHRNVC WENVMKRTSE 840 EEEETTTGTG EWILCGFEEA VGAPQIYPYG EVSESGRHAP EMERGLHGVK VDMWGVGFLI 900 KTCGLIGIPK MLKELQNRCM DQNPEHRLTA ADCYHHLLQL QSSLSTATGT SGGGLM

Sequence ? help Back to Top

Protein Sequence Length: 956 aa Download sequence

MGEKGEAPQQ QDYDSSSPKD PLDDSFETRP HGGGGHHHHH LHRRHHPHHD SSLIVASPFI  60
STPLYLPTAT ATTTPFEAVN PKRTRFTAGQ WKLLPSPSSS QLPIPVVGSD SSPSPSHRPT  120
GTATVAAAAA SSSDTTSSPS YSPLPSTASG QPEPAGSKGE GESQNQAQYR KGKYVSPVWK  180
PNEMLWLARA WRIQYQGGGS DDVGIVGGQG GRGSGSGSGK TRADKDREVA EYLQKHGVNR  240
DAKTGGTKWD NMLGEFRKVY EWERGGEREQ LVGKSYFRLS PYERKLHRLP ASFDEQVFEE  300
LCQFMGSKMR TKPTPLLPLT RALPPPPPFS SRSKQVFGVG YASVDASGSP THSCSSREIR  360
RIGKVRMVWE ESVSLWSEEA GEQPRGGGRI KIEGCSFLNA EDLTFFDESM VACTMESYDH  420
GPLKGLSIDR FVSGQQIKVF GRRKPPTCAT TGSHHGPPER LPLMHSTDPA ARSNTSWEYQ  480
DPTEYYVGCL RVPPTSLPSL SELSWHIQDP PSEELRLPIR KDVYAYLPQG KELMFTTTTQ  540
MLDCKSFIYE ILCPIIRTNP CITTTTSRDS FIGLWDDCIN RLVCEFCCME MRIIRKPNSP  600
STTTTNGLQD QWPNLTGFIR NFCLWRGEET DQIKDGQPHD LDPSNSIVEK LLWTYLDIPY  660
LLGYYAVGYL VTFCALSRGH DNRIIRTDLY SLDLSTPSER LKALVPCYRI AGVLSLLADG  720
CHKLPIFSDF ERIDIGKGIV MEMTPNLVTK IFSCRTKWTA VKEIYDFLDG RIPHSEFICG  780
SSDKDLAIVL KPRVCKLRPT SYEQLIEALK NVTKALVALH DLCFMHRNVC WENVMKRTSE  840
EEEETTTGTG EWILCGFEEA VGAPQIYPYG EVSESGRHAP EMERGLHGVK VDMWGVGFLI  900
KTCGLIGIPK MLKELQNRCM DQNPEHRLTA ADCYHHLLQL QSSLSTATGT SGGGLM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	1e-07	Trihelix family protein