PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023552705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 301aa MW: 33508.8 Da PI: 7.256 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 39.1 | 1.3e-12 | 235 | 259 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kte C+ + ++G C+yG+ C+FaHg XP_023552705.1 235 KTEVCKKWEESGGCPYGEHCRFAHG 259 9***********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence |
MEDDMCPPLP STLSSTAEAS PNSPQPENLC SLHFVSMYHS IFPPLLSSSS LSFTPSSSSS 60 SSSADDDFNN PCTAAPTSTT DDLLFQARLI LEHRELCQRH DLCLRRLRQV TDDVDCLRRE 120 NAQLQLANAE LIKILSSKTA VDDLVAIPNS HLRSLIGEGQ NGEEVGYEII SPTSVIRKYN 180 NQLEGRNNRR RTSLPKSISV RSAAASAAAA APLNIQSRRV CGPVELEVYK QGMEKTEVCK 240 KWEESGGCPY GEHCRFAHGV EELRPVIRHP RYKTQICRMV LSGEKCCYGH RCHFRHSLTH 300 Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66810.1 | 9e-56 | C3H family protein |