PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552705.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 301aa    MW: 33508.8 Da    PI: 7.256
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552705.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.11.3e-12235259226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     kte C+ + ++G C+yG+ C+FaHg
  XP_023552705.1 235 KTEVCKKWEESGGCPYGEHCRFAHG 259
                     9***********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MEDDMCPPLP STLSSTAEAS PNSPQPENLC SLHFVSMYHS IFPPLLSSSS LSFTPSSSSS  60
SSSADDDFNN PCTAAPTSTT DDLLFQARLI LEHRELCQRH DLCLRRLRQV TDDVDCLRRE  120
NAQLQLANAE LIKILSSKTA VDDLVAIPNS HLRSLIGEGQ NGEEVGYEII SPTSVIRKYN  180
NQLEGRNNRR RTSLPKSISV RSAAASAAAA APLNIQSRRV CGPVELEVYK QGMEKTEVCK  240
KWEESGGCPY GEHCRFAHGV EELRPVIRHP RYKTQICRMV LSGEKCCYGH RCHFRHSLTH  300
Q
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.19e-56C3H family protein