PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552654.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 462aa MW: 50859.5 Da PI: 6.6148

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552654.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	45.8	1.5e-14	181	240	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g XP_023552654.1 181 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqaRKgRQVYLGGYDKEDKAARAYDLAALKYWG 240 57*****************666664478446******99***********98 PP
2	AP2	50.4	5.7e-16	283	334	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_023552654.1 283 SIYRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 334 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence
MAPPPQTPPP TNWLSFSLSP IEMLRSTDSP FLPYEPPSTP SPHYLLDSFY SNNGWSGSAN 60 SHHNHEPKLE DFLGDSSPMM RYSDSQTETQ DSSLTHIYDH AYFGDQQDFK TIAAFQAFSG 120 NSGSEVDDSV SITRTQIAAA EIPTGALSLA VVQSSDTASA VVAVDSDSSK KIADTFGQRT 180 SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVYLGG YDKEDKAARA YDLAALKYWG 240 PTATTNFPVS NYAKELDEMK HVTKQEFIAS LRRKSSGFSR GASIYRGVTR HHQQGRWQAR 300 IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGLNAVTN FEMSRYDVEA IAKSALPIGG 360 AAKRLKLCLE AEEKPILNHD QAIQCGNGNN NMNLGTAIQA VPVPSIPCGI PYDTAAMLYH 420 HNYYHLQPNA IGSSESTSPA IAAPVNLGPQ AAEFFVWPHQ SY

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence

MAPPPQTPPP TNWLSFSLSP IEMLRSTDSP FLPYEPPSTP SPHYLLDSFY SNNGWSGSAN  60
SHHNHEPKLE DFLGDSSPMM RYSDSQTETQ DSSLTHIYDH AYFGDQQDFK TIAAFQAFSG  120
NSGSEVDDSV SITRTQIAAA EIPTGALSLA VVQSSDTASA VVAVDSDSSK KIADTFGQRT  180
SIYRGVTRHR WTGRYEAHLW DNSCRREGQA RKGRQVYLGG YDKEDKAARA YDLAALKYWG  240
PTATTNFPVS NYAKELDEMK HVTKQEFIAS LRRKSSGFSR GASIYRGVTR HHQQGRWQAR  300
IGRVAGNKDL YLGTFATEEE AAEAYDIAAI KFRGLNAVTN FEMSRYDVEA IAKSALPIGG  360
AAKRLKLCLE AEEKPILNHD QAIQCGNGNN NMNLGTAIQA VPVPSIPCGI PYDTAAMLYH  420
HNYYHLQPNA IGSSESTSPA IAAPVNLGPQ AAEFFVWPHQ SY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10510.2	1e-167	AP2 family protein