PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552635.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 438aa    MW: 47589.9 Da    PI: 5.2679
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552635.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS385.56e-118764353374
            GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                      lLl+cAe+v+ ++l++a+ lL ++sel+sp g++ +R+ ayf+ AL+ar+ +s+ ++y+ l+ ++ ++++s++ ++al+ ++ +sP++kfsh+t
  XP_023552635.1  76 GLLLQCAECVAMDNLQEANDLLPEISELSSPFGTSPERVGAYFAHALQARVISSCLGTYSPLSIRTLNQTQSQRMFNALQSYNSISPLIKFSHFT 170
                     58********************************************************************************************* PP

            GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                     aNqaI +a++ge+rvH+iD+d++qGlQWp L++ LasR+++  slRi g+gs    s+e l++tg+rLa+fA++lg+pfef+++  k  +  +++
  XP_023552635.1 171 ANQAIFQALDGEDRVHVIDLDVMQGLQWPGLFHILASRSKKIQSLRISGFGS----SSELLQSTGQRLADFATSLGLPFEFHPVEGKIGNLTDPK 261
                     ****************************************************....9**************************7666677779** PP

            GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                     +L+++ gEa++V++++  h l+d ++s       +L+l+ +l+Pk++++veq+++h ++sFl rf+eal+yysalfd+l  +l+ +s er++vE+
  XP_023552635.1 262 QLELRAGEAVVVHWMH--HCLYDITGSDIG----TLRLLSTLKPKLITIVEQDLSH-GGSFLGRFVEALHYYSALFDALGDSLAMDSVERHVVEQ 349
                     **************99..777777777777....**********************.789*********************************** PP

            GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +llg ei+n++a  g +r+ + + +e+W + l+++GF++v+l+ + a+qa+lll +++++gy++ ee+g+l lgWkd +L+++SaW+
  XP_023552635.1 350 QLLGCEIRNIIAVGGPKRTGEVK-VERWGDELKRVGFGAVSLGGNPAAQASLLLGMFPWKGYTLVEENGCLKLGWKDLSLLTASAWQ 435
                     *****************998887.9*************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    
MLRSLIPHSP INSASNSMSS KRPADADSSA DDPSSKRLNS GPSNFHAGAS GEKDVEEEEE  60
LPLVDGSDST GLRLLGLLLQ CAECVAMDNL QEANDLLPEI SELSSPFGTS PERVGAYFAH  120
ALQARVISSC LGTYSPLSIR TLNQTQSQRM FNALQSYNSI SPLIKFSHFT ANQAIFQALD  180
GEDRVHVIDL DVMQGLQWPG LFHILASRSK KIQSLRISGF GSSSELLQST GQRLADFATS  240
LGLPFEFHPV EGKIGNLTDP KQLELRAGEA VVVHWMHHCL YDITGSDIGT LRLLSTLKPK  300
LITIVEQDLS HGGSFLGRFV EALHYYSALF DALGDSLAMD SVERHVVEQQ LLGCEIRNII  360
AVGGPKRTGE VKVERWGDEL KRVGFGAVSL GGNPAAQASL LLGMFPWKGY TLVEENGCLK  420
LGWKDLSLLT ASAWQPCD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein