PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552316.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SRS

Protein Properties

Length: 266aa MW: 29062.6 Da PI: 7.404

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	104	2.5e-32	80	146	5	71
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaa 71 +sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa+krrer+ + ++ k+ +++++a+ XP_023552316.1 80 VISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDNTAAS 146 579*********************************************8888877777777665554 PP
2	DUF702	82.7	9.2e-26	139	202	92	155
DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 ++ ++ ++e+ +lP evss+avfrcvr++++d+ ++++aYqtav+igGh+fkGiLyd+G+e++ XP_023552316.1 139 PRDNTAASSEMGNLPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQ 202 5566777888999************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence
MAGFYPLGGG REPNYHLPTT TTTTITDGLF WYRNYESLGI WQQQQVQQQA GEGFVYSGDE 60 SPPRSSLVML RSGRNGGGQV ISCQDCGNQA KKDCLHMRCR TCCKSRGFDC ETHVKSTWVP 120 ASKRRERHLR SDGTNLKRPR DNTAASSEMG NLPVEVSSTA VFRCVRMTTL DETNDQFAYQ 180 TAVNIGGHTF KGILYDHGPE QQQQPPPPPP PNSASPDGGA LLITAPSTTM ELPPISTALL 240 DPPPPYPAPL NTYVAAGTQF FLPPTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	9e-51	SRS family protein