PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552315.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 530aa    MW: 59055.5 Da    PI: 6.272
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552315.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS296.18.9e-911685293374
            GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     e L+++A++++s+d++la+ +L+rl+++  ++++++p++R+a++f+eAL++ l+      ++  + s++s+ + +++++a+k+fs +sPi+ fsh
  XP_023552315.1 168 EDLVDAADCFDSNDFHLAHVILERLNHRlqSASSAKPLHRAAFFFKEALQSLLSA-----AANRHNSSSSWPDIVHTIKAHKAFSAISPIPLFSH 257
                     689************************98677777*******************9.....44445666667789********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpeg....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                     +t+Nq +lea++ ++ +HiiDfdi+ G+Q+++++++La+++e+    pp +RiT+v+ +e   + e + t+e+L +fA+ l+++f+++++  +++
  XP_023552315.1 258 FTTNQILLEALNASSFIHIIDFDIGFGGQYASFMKELADKAESrnvvPPVIRITAVVFEE--FAVESRLTRENLCQFAQDLKLRFHIDLVPLQTF 350
                     **************************************888544555***********65..8899999********************9999** PP

            GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerflealeyysalfdsleaklpres 279
                     ++l++++ ++ +gE++a+ l   ++r l +s  ++s    +L  v+ +sP +vv+v+ e  +d +++sF + +l++le+y+++++sl+a  +++ 
  XP_023552315.1 351 KTLSFKSVKFMEGEKVAILLTPTIFRRLGSSNGIAS----FLADVRLVSPCIVVFVDFEgwSDSGKASFKRNLLDSLEFYAMMLESLDAA-GADG 440
                     ****************************88777777....*******************777889**********************998.7899 PP

            GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e+ + +E ++l+++i  +v  +g++       +  Wre ++++G++pv+ls++a  qa++ll kv+++g++v +++++lvl+W++rpLv++SaWr
  XP_023552315.1 441 EWVRRIETFVLRPKILAAVEGAGRM------AVPPWREVFHSVGMRPVALSQFADFQAECLLGKVQVRGFQVGKRHAELVLCWHERPLVATSAWR 529
                     *******************999998......799************************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    
MRVPVSNHHS SKPPSSAPAP NPKLDSSXPG YEPTSVLDLR RSPSPVAPDN PLSSADDRHN  60
NSHPLDWDER TLQNLDWESI MGDLGVNDDS NSALKNTTAA TTTTDDNTHD HVPQFSEFLH  120
SQPFDQTAHL LPSDFFLSEP YSNHSAAMLH HTFDFAPNSN DPSLHFLEDL VDAADCFDSN  180
DFHLAHVILE RLNHRLQSAS SAKPLHRAAF FFKEALQSLL SAAANRHNSS SSWPDIVHTI  240
KAHKAFSAIS PIPLFSHFTT NQILLEALNA SSFIHIIDFD IGFGGQYASF MKELADKAES  300
RNVVPPVIRI TAVVFEEFAV ESRLTRENLC QFAQDLKLRF HIDLVPLQTF KTLSFKSVKF  360
MEGEKVAILL TPTIFRRLGS SNGIASFLAD VRLVSPCIVV FVDFEGWSDS GKASFKRNLL  420
DSLEFYAMML ESLDAAGADG EWVRRIETFV LRPKILAAVE GAGRMAVPPW REVFHSVGMR  480
PVALSQFADF QAECLLGKVQ VRGFQVGKRH AELVLCWHER PLVATSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-128GRAS family protein