PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023552309.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SRS

Protein Properties

Length: 268aa MW: 29232.8 Da PI: 7.404

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023552309.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	103.7	3.1e-32	80	144	5	69
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaae 69 +sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa+krrer+ + ++ k+ +++++ XP_023552309.1 80 VISCQDCGNQAKKDCLHMRCRTCCKSRGFDCETHVKSTWVPASKRRERHLRSDGTNLKRPRDNTA 144 579*********************************************88877777666666554 PP
2	DUF702	82.6	1e-25	142	204	93	155
DUF702 93 saeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 ++ +++ le+ +lP evss+avfrcvr++++d+ ++++aYqtav+igGh+fkGiLyd+G+e++ XP_023552309.1 142 NTAASSGLEMGNLPVEVSSTAVFRCVRMTTLDETNDQFAYQTAVNIGGHTFKGILYDHGPEQQ 204 455667888999************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
MAGFYPLGGG REPNYHLPTT TTTTITDGLF WYRNYESLGI WQQQQVQQQA GEGFVYSGDE 60 SPPRSSLVML RSGRNGGGQV ISCQDCGNQA KKDCLHMRCR TCCKSRGFDC ETHVKSTWVP 120 ASKRRERHLR SDGTNLKRPR DNTAASSGLE MGNLPVEVSS TAVFRCVRMT TLDETNDQFA 180 YQTAVNIGGH TFKGILYDHG PEQQQQPPPP PPPNSASPDG GALLITAPST TMELPPISTA 240 LLDPPPPYPA PLNTYVAAGT QFFLPPTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-52	SRS family protein