PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023552003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 785aa MW: 92089.3 Da PI: 6.6545 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.1 | 1.2e-06 | 231 | 250 | 6 | 25 |
-SGGGGTS--TTTTT-SS-S CS zf-CCCH 6 CrffartGtCkyGdrCkFaH 25 C+f+++tG C++G rC+++H XP_023552003.1 231 CPFHLKTGACRFGQRCSRIH 250 *******************9 PP | |||||||
2 | zf-CCCH | 25.3 | 2.7e-08 | 360 | 387 | 1 | 26 |
--S---SGGGGTS..--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartG..tCkyGdrCkFaHg 26 +k ++C f++t tC++G C+F+H+ XP_023552003.1 360 WKIAICGEFMKTRyqTCSHGTACNFIHC 387 7889***********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 785 aa Download sequence |
MEEPEFVGEE EEKPQGTEAG SIEKPCSLEN LCRKEKRKAL KKIKRKQLRK EEALKKLQEE 60 EAQLNDPEEQ RRIRLMELEE EERSERERKL FEERERAWLE AMELKKKKMA EEEEEEEQRR 120 RALEEESTAR QAENENELNA EDGWEYIEGP AEVIWKGDEI ILKKKLIKVP KKGVEPEKSL 180 EDPHRPTSNP LPPQSEDITD CKNAPISTRQ VIDDVASQVP NFGTEQDKSH CPFHLKTGAC 240 RFGQRCSRIH FYPDKSCTLL IKNMYNGPGL AWEQDEGLEF ADEEVECCYE EFYEDVHTEF 300 LKYGEIVNFK VCKNGSFHLR GNLYVHYKSL DSAVLAYNAN NGRFYAGKQV ICEFVNVTRW 360 KIAICGEFMK TRYQTCSHGT ACNFIHCFRN PGGDYEWADS DKPPPRYWVK KMASLFGYLD 420 ESENEKHTEL EHWDKFGKSS RSMSTDVDRY RSRRSKSRSL DHGSRRSKNS ENDYTRHSRR 480 EKVHENQQSL DKEEYEQANL KYYHRRNNRF NDADSDESAD KFDERSKDRE RGRRSRVRNA 540 DHDDSKNTSN ETDEGWSSGD GNKYVHRHQR RKSNGHVSET FKTTGGSPSQ SAISDHDTRG 600 ISSDRNKERR VSYGGKHKKR WDEVTKDSDD QLKQKSKLKT DYECKKFSLR KSSGLPSDGR 660 QEQSISDRYI ERSEPMNLDK EFCNNEHTDK EGRWDPGRSY DEFEKFSEST SAMHSEAGSP 720 VRQGERFKSD VLGRVDYYGN KVKKRNHREL KSSDSYEQRT SRRKSSRPDD DQNFSDLKYD 780 NTNTN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10320.1 | 1e-130 | C3H family protein |