PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023552003.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 785aa    MW: 92089.3 Da    PI: 6.6545
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023552003.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.11.2e-06231250625
                     -SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                     C+f+++tG C++G rC+++H
  XP_023552003.1 231 CPFHLKTGACRFGQRCSRIH 250
                     *******************9 PP

2zf-CCCH25.32.7e-08360387126
                     --S---SGGGGTS..--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                     +k ++C  f++t   tC++G  C+F+H+
  XP_023552003.1 360 WKIAICGEFMKTRyqTCSHGTACNFIHC 387
                     7889***********************8 PP

Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    
MEEPEFVGEE EEKPQGTEAG SIEKPCSLEN LCRKEKRKAL KKIKRKQLRK EEALKKLQEE  60
EAQLNDPEEQ RRIRLMELEE EERSERERKL FEERERAWLE AMELKKKKMA EEEEEEEQRR  120
RALEEESTAR QAENENELNA EDGWEYIEGP AEVIWKGDEI ILKKKLIKVP KKGVEPEKSL  180
EDPHRPTSNP LPPQSEDITD CKNAPISTRQ VIDDVASQVP NFGTEQDKSH CPFHLKTGAC  240
RFGQRCSRIH FYPDKSCTLL IKNMYNGPGL AWEQDEGLEF ADEEVECCYE EFYEDVHTEF  300
LKYGEIVNFK VCKNGSFHLR GNLYVHYKSL DSAVLAYNAN NGRFYAGKQV ICEFVNVTRW  360
KIAICGEFMK TRYQTCSHGT ACNFIHCFRN PGGDYEWADS DKPPPRYWVK KMASLFGYLD  420
ESENEKHTEL EHWDKFGKSS RSMSTDVDRY RSRRSKSRSL DHGSRRSKNS ENDYTRHSRR  480
EKVHENQQSL DKEEYEQANL KYYHRRNNRF NDADSDESAD KFDERSKDRE RGRRSRVRNA  540
DHDDSKNTSN ETDEGWSSGD GNKYVHRHQR RKSNGHVSET FKTTGGSPSQ SAISDHDTRG  600
ISSDRNKERR VSYGGKHKKR WDEVTKDSDD QLKQKSKLKT DYECKKFSLR KSSGLPSDGR  660
QEQSISDRYI ERSEPMNLDK EFCNNEHTDK EGRWDPGRSY DEFEKFSEST SAMHSEAGSP  720
VRQGERFKSD VLGRVDYYGN KVKKRNHREL KSSDSYEQRT SRRKSSRPDD DQNFSDLKYD  780
NTNTN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-130C3H family protein