PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551808.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

GATA

Protein Properties

Length: 539aa MW: 60037.9 Da PI: 6.5725

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551808.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.9	4.5e-16	7	41	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +Cg+t+TplWR+gp ++ LCnaCG ++r kg+ XP_023551808.1 7 CYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGT 41 **************55555*********997 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLTNYTPLHA RADPDECEDK 60 RVSKWKNLSM CKNKEVKLLK RKQYQDNGVV VGVIPDHAQS FHKAVDEDTS YRSSSGSAIS 120 NSESCQQFGS ADASDLTGPS QSTAWETIVP SRKRTCVGRS KSTAVEKLTQ DLYTILREQQ 180 SYFSGSSEED LLFDNETPMV SVEIGHGSVL IRHPSSITRE EESEASSISV DNKQFTVNEV 240 YSEPSILPVH YEADNKTVNF STLGIGRKHS NGQWFLQEQI KRGRPQSEKT QALGNRNSPL 300 CNIDLTDILN FREFTKQLTS EDQQELMKYL PSVDTEELPD SLNSMFESPE FKENLNSFKQ 360 LLTEGVFDFS FPGAKREDCR SLSRLVLWDL SKSKWVERYH LLKKCSSGVA VQGFAAASSG 420 FMNGKRVLDG QNKKLSETRT AMKSPKRGTT KTSVESKELV DSDGSCFSPR SLFALPSDGG 480 SFTLESLHFD EDSSDQDLLL DVRSNNSFPQ AELLHPSLSF GTPQASNSSS SVNLRLMHH

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MGKQGPCYHC GVTSTPLWRN GPPDKPVLCN ACGSRWRTKG TLTNYTPLHA RADPDECEDK  60
RVSKWKNLSM CKNKEVKLLK RKQYQDNGVV VGVIPDHAQS FHKAVDEDTS YRSSSGSAIS  120
NSESCQQFGS ADASDLTGPS QSTAWETIVP SRKRTCVGRS KSTAVEKLTQ DLYTILREQQ  180
SYFSGSSEED LLFDNETPMV SVEIGHGSVL IRHPSSITRE EESEASSISV DNKQFTVNEV  240
YSEPSILPVH YEADNKTVNF STLGIGRKHS NGQWFLQEQI KRGRPQSEKT QALGNRNSPL  300
CNIDLTDILN FREFTKQLTS EDQQELMKYL PSVDTEELPD SLNSMFESPE FKENLNSFKQ  360
LLTEGVFDFS FPGAKREDCR SLSRLVLWDL SKSKWVERYH LLKKCSSGVA VQGFAAASSG  420
FMNGKRVLDG QNKKLSETRT AMKSPKRGTT KTSVESKELV DSDGSCFSPR SLFALPSDGG  480
SFTLESLHFD EDSSDQDLLL DVRSNNSFPQ AELLHPSLSF GTPQASNSSS SVNLRLMHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17570.3	1e-151	GATA family protein