PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023551786.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 631aa    MW: 69813.6 Da    PI: 6.3194
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023551786.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS398.95.2e-1222506262374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                      ++L++c+ea++s++ +l+++l+++l  +asp+g +p++Rl+ay+teALa r++r ++++++  pp+e + +  +++ +al+l++evsPi+kf +
  XP_023551786.1 250 LSVLMACVEAIRSKNITLINHLIEKLGSQASPRGsSPITRLIAYYTEALAVRVSRVWPQVFHVRPPREYD-RIDDDTGTALRLLNEVSPIPKFIY 343
                     579*******************************99*************************999999997.5578888999************** PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                     +taN+++l+a+eg+++vHiiDfdi+qGlQWp+L+q+LasR+++p ++RiTg+g+    sk+el+etg+rLa fAe+l++pfef++ v++rled++
  XP_023551786.1 344 FTANEMLLRAFEGKDKVHIIDFDIKQGLQWPSLFQSLASRANPPSHVRITGIGE----SKQELNETGDRLAGFAEALRLPFEFHA-VVDRLEDVR 433
                     ******************************************************....***************************.7******** PP

            GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     l++L+vk++E++ Vn++lqlh++l ++       + +++L l++s++P +vv+ eqea+hn++++ +r++ +l+yy a+fdsl+++lp++s+ r 
  XP_023551786.1 434 LWMLHVKENESVGVNCILQLHKTLYDNNINGGggALKDFLGLIRSTNPSIVVMGEQEAEHNDPRLETRVAATLKYYGAIFDSLDTSLPPDSSGRL 528
                     ***********************97776665578999********************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerlee.aGFkpvplsek.aakqaklllrkvk.sdgyrve...ee..sgslvlgWkdrpLvsv 370
                     k+E++ +grei+n++ ceg+er erh  +ekW++ +e+  G++ v ++++ +  q + ll++++  dg++v    ee   ++++l W+++pL+sv
  XP_023551786.1 529 KIEEM-FGREIRNMIGCEGRERYERHVGFEKWKKVMEKqGGLRCVGIRDDrELLQSQILLKMYSsADGFKVRkieEEggAQAVCLAWEEQPLYSV 622
                     *****.******************************87489******8752678***************998663335556778*********** PP

            GRAS 371 SaWr 374
                     S W+
  XP_023551786.1 623 SGWT 626
                     ***5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    
MLAGCSSSTL LSPRNHLRSE VVQSPFQACL LQFPPSMSAQ RLDLPCSFSR SKDASSVARS  60
PSIRPVSLSV EKQDIRLPPL SATNQKIKQE FWNGKGKNLK RIAEQVGIDD DESSISNAKR  120
KRACRDDVGD GLILSQFGGG VRSFWYHQQP DGDEGLCFLP GSSTSQFMSK IADLGEGHDG  180
ESSHVKAQDG SDSVSGSDSG SSSSSRSERF AAAEAGPEIG NGSSRNPSYH HHQGSGLANE  240
RGEEESFELL SVLMACVEAI RSKNITLINH LIEKLGSQAS PRGSSPITRL IAYYTEALAV  300
RVSRVWPQVF HVRPPREYDR IDDDTGTALR LLNEVSPIPK FIYFTANEML LRAFEGKDKV  360
HIIDFDIKQG LQWPSLFQSL ASRANPPSHV RITGIGESKQ ELNETGDRLA GFAEALRLPF  420
EFHAVVDRLE DVRLWMLHVK ENESVGVNCI LQLHKTLYDN NINGGGGALK DFLGLIRSTN  480
PSIVVMGEQE AEHNDPRLET RVAATLKYYG AIFDSLDTSL PPDSSGRLKI EEMFGREIRN  540
MIGCEGRERY ERHVGFEKWK KVMEKQGGLR CVGIRDDREL LQSQILLKMY SSADGFKVRK  600
IEEEGGAQAV CLAWEEQPLY SVSGWTAAEV S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein