PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551733.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

HB-PHD

Protein Properties

Length: 872aa MW: 97041.9 Da PI: 4.578

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551733.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.5	2.6e-14	698	749	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++++ le+L + F++n+yp ++++e LA++lgL+ +qV+ WF N R + XP_023551733.1 698 RRLSQLALERLLASFQENQYPERATKESLAQELGLSVKQVSKWFTNTRWSTR 749 6789999*****************************************8766 PP
2	PHD	37.6	5e-13	338	393	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ Cg+ e++++lCdg C++ fH+ Cl+++l ++++p + wlC+ C++k XP_023551733.1 338 FCAKCGSkeLSLENDIILCDGiCDRGFHQFCLEPPLLNTDIPPDdeGWLCPGCDCK 393 6999965556****88***************99999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 872 aa Download sequence
MEERDEYTES RSNNNAEAVQ EAKISVEAEM PTCLSNEQKH SVPDYHELEA TPEYTNKTGG 60 PDEEKPEVQQ NMEEENKELG SGDVLSELSE KHNRTFSNLA DNDQVEAGNL LCCDKDTENL 120 IVPIEVETTT LLVDCSELPP EVVNKNYIEQ MNPPIEELTQ NTPFQNLETV PSNSEQSDHK 180 DKRILKSMKI KSILRSLVSS DRNMRSKTQE KDKDPEPSND LNNFTAEEGK GKKKERNIQG 240 KGARVDEFSS IRNHLRYLLN RIKYEQNLIE AYSSEGWKGF SSDKLKPEKE LQRASNEIMR 300 RKLKIRDVFQ RIDALCGEGG LSKSLFDSQG QIDSEDIFCA KCGSKELSLE NDIILCDGIC 360 DRGFHQFCLE PPLLNTDIPP DDEGWLCPGC DCKDDCLNLL NEFQGSRLSI TDGWEKVYPE 420 AAASAAGRNF DHALGLPSDD SEDDDYDPDV PDTIVQDDES SSETSGYASA SEELESPSNV 480 DQYLGLPSDD SDDDDYDPSA PERDEDVRQE SSSSDFTSDS EDLAALDSSP SSKADNLVSS 540 SLNNTTSTKN PDGRSSGGGP RKSALYNELS SLLESDPEPV LGRRQVERLD YKKLHDETYG 600 NVPTDSSDDT YASISTDSSD DQGWDSNTRK RSPKTLVLAL PNYRTNDDMT NVKTKHSSKR 660 GTRQKAAAVN MNKSVTKTPE DTGKASSSVR RTTPSSYRRL SQLALERLLA SFQENQYPER 720 ATKESLAQEL GLSVKQVSKW FTNTRWSTRH PSSVEGNKAK SSSRMGIRSS QASGELHQPE 780 QEFGAQHQEL PTTDSVVAPC QSGDTGDVKL ATQETKRSEF SAAKSRKRKG RSDHAASCSK 840 DSKESQRPPA KSPKVNEIQT AHSIKTRRRN SL

Sequence ? help Back to Top

Protein Sequence Length: 872 aa Download sequence

MEERDEYTES RSNNNAEAVQ EAKISVEAEM PTCLSNEQKH SVPDYHELEA TPEYTNKTGG  60
PDEEKPEVQQ NMEEENKELG SGDVLSELSE KHNRTFSNLA DNDQVEAGNL LCCDKDTENL  120
IVPIEVETTT LLVDCSELPP EVVNKNYIEQ MNPPIEELTQ NTPFQNLETV PSNSEQSDHK  180
DKRILKSMKI KSILRSLVSS DRNMRSKTQE KDKDPEPSND LNNFTAEEGK GKKKERNIQG  240
KGARVDEFSS IRNHLRYLLN RIKYEQNLIE AYSSEGWKGF SSDKLKPEKE LQRASNEIMR  300
RKLKIRDVFQ RIDALCGEGG LSKSLFDSQG QIDSEDIFCA KCGSKELSLE NDIILCDGIC  360
DRGFHQFCLE PPLLNTDIPP DDEGWLCPGC DCKDDCLNLL NEFQGSRLSI TDGWEKVYPE  420
AAASAAGRNF DHALGLPSDD SEDDDYDPDV PDTIVQDDES SSETSGYASA SEELESPSNV  480
DQYLGLPSDD SDDDDYDPSA PERDEDVRQE SSSSDFTSDS EDLAALDSSP SSKADNLVSS  540
SLNNTTSTKN PDGRSSGGGP RKSALYNELS SLLESDPEPV LGRRQVERLD YKKLHDETYG  600
NVPTDSSDDT YASISTDSSD DQGWDSNTRK RSPKTLVLAL PNYRTNDDMT NVKTKHSSKR  660
GTRQKAAAVN MNKSVTKTPE DTGKASSSVR RTTPSSYRRL SQLALERLLA SFQENQYPER  720
ATKESLAQEL GLSVKQVSKW FTNTRWSTRH PSSVEGNKAK SSSRMGIRSS QASGELHQPE  780
QEFGAQHQEL PTTDSVVAPC QSGDTGDVKL ATQETKRSEF SAAKSRKRKG RSDHAASCSK  840
DSKESQRPPA KSPKVNEIQT AHSIKTRRRN SL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-93	HB-PHD family protein