PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023551301.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 348aa MW: 38622.5 Da PI: 8.3308 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 46.4 | 6.5e-15 | 262 | 287 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tG C+yGd C+FaHg XP_023551301.1 262 FKTELCNKWQETGSCPYGDHCQFAHG 287 79***********************8 PP | |||||||
2 | zf-CCCH | 18.4 | 3.9e-06 | 300 | 324 | 1 | 25 |
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H XP_023551301.1 300 YKTEVCRMVLA-GvVCPYGHRCHFRH 324 9**********.66**********88 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 348 aa Download sequence |
MHKSTTSASN TIAAGTTMSS SSQLKSQLQT NNVYASLYNS SIFAPKQSVP VSLPSTLYGD 60 STHTDSISAS KSINNHLYQT CVVQDHQEMV NRHSLCLTHL REATEEADAL RQENIHLRSI 120 NHELSKHLSL LIHASVQKQY GSSDQTPPFN FVEGFRGLSV AEKGASSSTW EDISDESPTS 180 VMEGGRVEGV EVERFSLPKS ISVRSNGYLK MAQGGSSQGG KVRVSSRPRT ASPVKVTQKV 240 YVQGVKEEEK PLELEVYNQG MFKTELCNKW QETGSCPYGD HCQFAHGIEE LRPVIRHPRY 300 KTEVCRMVLA GVVCPYGHRC HFRHALTDQE RLMGPLKPTC RTAPKLDR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68200.1 | 3e-82 | C3H family protein |