PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023551301.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 348aa    MW: 38622.5 Da    PI: 8.3308
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023551301.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.46.5e-15262287126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +ktelC+ +++tG C+yGd C+FaHg
  XP_023551301.1 262 FKTELCNKWQETGSCPYGDHCQFAHG 287
                     79***********************8 PP

2zf-CCCH18.43.9e-06300324125
                     --S---SGGGGTS.--TTTTT-SS-S CS
         zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaH 25 
                     ykte Cr  ++ G  C+yG rC+F H
  XP_023551301.1 300 YKTEVCRMVLA-GvVCPYGHRCHFRH 324
                     9**********.66**********88 PP

Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    
MHKSTTSASN TIAAGTTMSS SSQLKSQLQT NNVYASLYNS SIFAPKQSVP VSLPSTLYGD  60
STHTDSISAS KSINNHLYQT CVVQDHQEMV NRHSLCLTHL REATEEADAL RQENIHLRSI  120
NHELSKHLSL LIHASVQKQY GSSDQTPPFN FVEGFRGLSV AEKGASSSTW EDISDESPTS  180
VMEGGRVEGV EVERFSLPKS ISVRSNGYLK MAQGGSSQGG KVRVSSRPRT ASPVKVTQKV  240
YVQGVKEEEK PLELEVYNQG MFKTELCNKW QETGSCPYGD HCQFAHGIEE LRPVIRHPRY  300
KTEVCRMVLA GVVCPYGHRC HFRHALTDQE RLMGPLKPTC RTAPKLDR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.13e-82C3H family protein