PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551227.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

LBD

Protein Properties

Length: 234aa MW: 25447.2 Da PI: 8.4775

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551227.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.2	4.4e-41	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv k+l ++pe++r da++slvyeA+ r+rdPvyG++g i++lq+ql++l+a+l+ XP_023551227.1 42 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVAKMLMEVPESQRADAANSLVYEANLRLRDPVYGCMGAISALQHQLQTLQADLN 136 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_023551227.1 137 AIRTE 141 99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence
MSRERELQEV DEIKREVVEG FYPLMGRRQI LSQAGALNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPHK FASVHKVFGA SNVAKMLMEV PESQRADAAN SLVYEANLRL RDPVYGCMGA 120 ISALQHQLQT LQADLNAIRT EILKYKYREA IIPSPSSSSS SHIAFISATG LVSTTATPPT 180 APPTPPPSQP PPLSLPPPLP PSSSSSSIFS PPISTTTAPQ LINPISTQHI PYFG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-74	LBD family protein