PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023551183.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

WRKY

Protein Properties

Length: 498aa MW: 54455.9 Da PI: 8.3626

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023551183.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.4	1.5e-33	225	281	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK vkgse+prsYY+Ct+ +Cpvkkk+ers d++++ei+Y+g+Hnhe XP_023551183.1 225 DDGYNWRKYGQKLVKGSEYPRSYYKCTHLNCPVKKKIERSP-DGQITEIIYKGQHNHE 281 8**************************************.*************8 PP
2	WRKY	106.1	1.8e-33	384	442	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+vers++d k+v++tYeg+Hnh+ XP_023551183.1 384 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCNVRKHVERSSTDSKAVVTTYEGKHNHD 442 59********************************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence
MAKNKDDHSA RPPPRPTITL PPRPSMEAFF AGGPTGLSPG PMTLVSSFFA DAAVDSPSFS 60 QLLAGAMASP IAMGFLGTGS TPNSESEFGL KQSKPMNLVV ARSPLFSVPP GLSPSGLLNS 120 PGFYPPQSPF GMSHQQALAQ VTAQAALAHS HMHMQQAEYQ HSSIPASTEP LIRDPSFTLD 180 EASLQLILPS TSDTKSLVPE STEVSHPDRK YQPPPPHAAS DKPADDGYNW RKYGQKLVKG 240 SEYPRSYYKC THLNCPVKKK IERSPDGQIT EIIYKGQHNH ERPPANKRAR DNSEPTGCTN 300 SSTKLECGLQ NQAGILNKSS ENVQVGSSDS EEQGDTEITD DRDEDEPNPK RQNIEAGTSG 360 AALSHKTLTE PKIIVQTRSE VDLLDDGYRW RKYGQKVVKG NPNPRSYYKC TSAGCNVRKH 420 VERSSTDSKA VVTTYEGKHN HDVPAARNSS HHTVNNTVHQ IKPHKVVAQK HPLLKELEFG 480 SNEQRPAVLR LKEEKITV

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence

MAKNKDDHSA RPPPRPTITL PPRPSMEAFF AGGPTGLSPG PMTLVSSFFA DAAVDSPSFS  60
QLLAGAMASP IAMGFLGTGS TPNSESEFGL KQSKPMNLVV ARSPLFSVPP GLSPSGLLNS  120
PGFYPPQSPF GMSHQQALAQ VTAQAALAHS HMHMQQAEYQ HSSIPASTEP LIRDPSFTLD  180
EASLQLILPS TSDTKSLVPE STEVSHPDRK YQPPPPHAAS DKPADDGYNW RKYGQKLVKG  240
SEYPRSYYKC THLNCPVKKK IERSPDGQIT EIIYKGQHNH ERPPANKRAR DNSEPTGCTN  300
SSTKLECGLQ NQAGILNKSS ENVQVGSSDS EEQGDTEITD DRDEDEPNPK RQNIEAGTSG  360
AALSHKTLTE PKIIVQTRSE VDLLDDGYRW RKYGQKVVKG NPNPRSYYKC TSAGCNVRKH  420
VERSSTDSKA VVTTYEGKHN HDVPAARNSS HHTVNNTVHQ IKPHKVVAQK HPLLKELEFG  480
SNEQRPAVLR LKEEKITV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-125	WRKY family protein