PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023551168.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | GRAS | ||||||||
Protein Properties | Length: 446aa MW: 49071 Da PI: 5.1965 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 283 | 8.8e-87 | 124 | 431 | 72 | 373 |
GRAS 72 knsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetg 162 ++ +++laa++l++e+sP++kf+h+taNqaIleav+ ++rvHi+D++i++G+QW++L+qaL sR+++pp +lRiT++++ s+ +++etg XP_023551168.1 124 HSPTDVLAAFQLLQEMSPYVKFGHFTANQAILEAVADDRRVHIVDYNIMEGIQWASLMQALVSRKDSPPapHLRITAISRGPSSrrWIGTVQETG 218 3478999**********************************************************554444********96555567789***** PP GRAS 163 erLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse...sFl 254 +rL fA+++g pf+f+ ++ e+++++ L++ +gEal+Vn+vl+l ++ + ++++ +d++L k+l+P++v++ve+e++h+ + ++ XP_023551168.1 219 RRLVAFAASIGQPFSFHQCKLDSDESFRPSGLKLVRGEALVVNCVLHLPHFSN---TSPESIDSFLAGAKTLNPRLVTLVEEEIEHGPTidgDYK 310 ******************9999*****************************83...3334467***********************744444*** PP GRAS 255 erflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerre..rhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 +fl++le ysa++dslea++p ++++r vE+++lg++i+ + g+ +r+ e+ +W erle++G+k++++s + +qa+ll+ ++ d XP_023551168.1 311 VQFLDSLERYSAIYDSLEAGIPMKNRARGLVEKVFLGPRISATLKRIGQPQRAatAAEENCSWGERLEKMGLKAAAISFANHCQARLLVDLFN-D 404 *********************************************99988554114577789*******************************.* PP GRAS 348 gyrveee.sgslvlgWkdrpLvsvSaW 373 gyrvee s+ lvlgWk+++L+svS W XP_023551168.1 405 GYRVEELgSNKLVLGWKSKRLLSVSIW 431 *****987999**************** PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence |
MAMAVDNAFN GVAVSDYSTS TNNSDDDFHD LFDSIMSIDA LPYSPQVVEV DGGTNCNSPS 60 NPAEDREEEE EEFKSLRLYH LLMAVADAMF GDHKSRDLAQ DLLDYAAVSG GGSNKPHHLH 120 RDDHSPTDVL AAFQLLQEMS PYVKFGHFTA NQAILEAVAD DRRVHIVDYN IMEGIQWASL 180 MQALVSRKDS PPAPHLRITA ISRGPSSRRW IGTVQETGRR LVAFAASIGQ PFSFHQCKLD 240 SDESFRPSGL KLVRGEALVV NCVLHLPHFS NTSPESIDSF LAGAKTLNPR LVTLVEEEIE 300 HGPTIDGDYK VQFLDSLERY SAIYDSLEAG IPMKNRARGL VEKVFLGPRI SATLKRIGQP 360 QRAATAAEEN CSWGERLEKM GLKAAAISFA NHCQARLLVD LFNDGYRVEE LGSNKLVLGW 420 KSKRLLSVSI WASSSLSSSS SSSDSE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08250.1 | 1e-128 | GRAS family protein |