PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023550820.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

NF-X1

Protein Properties

Length: 870aa MW: 97556.7 Da PI: 8.4785

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023550820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	24.8	4.5e-08	236	254	1	19
zf-NF-X1 1 CGkHkCqklCHeGpCppCp 19 C++HkC ++CHeG CppC+ XP_023550820.1 236 CSRHKCAEICHEGSCPPCR 254 9*****************7 PP
2	zf-NF-X1	17.2	1.1e-05	396	415	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C + C+ G+CppC++ XP_023550820.1 396 CGRHACRRRCCDGDCPPCSE 415 ******************85 PP
3	zf-NF-X1	16.9	1.4e-05	417	441	1	19
zf-NF-X1 1 CG......kHkCqklCHeGpCppCp 19 CG +HkC ++CH+GpC pCp XP_023550820.1 417 CGrrlrckNHKCPSPCHRGPCAPCP 441 777777779***************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 870 aa Download sequence
MISTHDHRRT ISDSDSNSDD DNTGSQSLRH LDLSDSVFKA YFEFTGRSTT TADLSKIQSF 60 LTSSSSGALS CLICLERIRL TDPTWSCYSL CFDVFHLFCI QSWARQASDL AAARAATRSL 120 VSPDKPDEHS GWNCPKCRVE YSKSSIPKKY FCFCGKLENP PSDDPWILPH SCGEVCGRPL 180 KHNCGHHCLL LCHPGPCPSC PKIVQASCYC GSVRDARRCG FKNFSCNNVC SKVLDCSRHK 240 CAEICHEGSC PPCRIQGVFK CQCGKTVEKR ECWDRNFRCE IECNKLLGCG KHSCNEGCHS 300 GECGQCPFKG KRTCPCGKKA YEGIPCDVAV SLCGATCEKM LPCGYHRCPE RCHRGPCIGT 360 CRTVVFKSCR CGSLRKEIPC YQDLACERKC QRMRDCGRHA CRRRCCDGDC PPCSEICGRR 420 LRCKNHKCPS PCHRGPCAPC PVMVTISCAC GETHFEVPCG TEMDQKPPKC PKRCPVPPLC 480 SHRLSLKPHK CHYGACPPCR RICEEEYACG HKCQLRCHGP KPPPKPEFTL KPRKKKAFHP 540 EEPTPGCLCP PCPELVWRPC LGQHIGAERM MVCSNITQFS CDNLCGNPLP CTNHYCTKLC 600 HTLKSQPPSS SRKDLSESCE KCNLPCEKER KPKCAHPCPV KCHPGDCPPC KVLLKRSCHC 660 GTMVHVFECM YYITLPPKEQ MAVLSCGGPC HRKLPHCTHL CSETCHPGKC PSPENCSKKV 720 TVRCGCQTLK KEWLCKDVQA AYSKTDRDPK DIPKTQFGYG LLPCGSDCKR KVQVVESELS 780 QRKPEVAGVK EADTKKQVSK RKRRRDTIQE VKPISRLQKL FGALKYTLVI MVIMIAVVLI 840 SLYGYKGLLW LNDWMNEAEK QRPRRRYPRI

Sequence ? help Back to Top

Protein Sequence Length: 870 aa Download sequence

MISTHDHRRT ISDSDSNSDD DNTGSQSLRH LDLSDSVFKA YFEFTGRSTT TADLSKIQSF  60
LTSSSSGALS CLICLERIRL TDPTWSCYSL CFDVFHLFCI QSWARQASDL AAARAATRSL  120
VSPDKPDEHS GWNCPKCRVE YSKSSIPKKY FCFCGKLENP PSDDPWILPH SCGEVCGRPL  180
KHNCGHHCLL LCHPGPCPSC PKIVQASCYC GSVRDARRCG FKNFSCNNVC SKVLDCSRHK  240
CAEICHEGSC PPCRIQGVFK CQCGKTVEKR ECWDRNFRCE IECNKLLGCG KHSCNEGCHS  300
GECGQCPFKG KRTCPCGKKA YEGIPCDVAV SLCGATCEKM LPCGYHRCPE RCHRGPCIGT  360
CRTVVFKSCR CGSLRKEIPC YQDLACERKC QRMRDCGRHA CRRRCCDGDC PPCSEICGRR  420
LRCKNHKCPS PCHRGPCAPC PVMVTISCAC GETHFEVPCG TEMDQKPPKC PKRCPVPPLC  480
SHRLSLKPHK CHYGACPPCR RICEEEYACG HKCQLRCHGP KPPPKPEFTL KPRKKKAFHP  540
EEPTPGCLCP PCPELVWRPC LGQHIGAERM MVCSNITQFS CDNLCGNPLP CTNHYCTKLC  600
HTLKSQPPSS SRKDLSESCE KCNLPCEKER KPKCAHPCPV KCHPGDCPPC KVLLKRSCHC  660
GTMVHVFECM YYITLPPKEQ MAVLSCGGPC HRKLPHCTHL CSETCHPGKC PSPENCSKKV  720
TVRCGCQTLK KEWLCKDVQA AYSKTDRDPK DIPKTQFGYG LLPCGSDCKR KVQVVESELS  780
QRKPEVAGVK EADTKKQVSK RKRRRDTIQE VKPISRLQKL FGALKYTLVI MVIMIAVVLI  840
SLYGYKGLLW LNDWMNEAEK QRPRRRYPRI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	800	805	KRKRRR
2	801	805	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	NF-X1 family protein