PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023550819.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 600aa    MW: 65310.4 Da    PI: 4.6449
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023550819.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS448.44.7e-1372275931374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     lv++Ll+cAeav++++++la+al++++  la++++ +m+++a+yf++ALa+r+++    +y+      +s    s+ l++   f+e++P+lkf+h
  XP_023550819.1 227 LVHALLACAEAVQQENMKLADALVKHIGFLAASQAGAMRKVATYFAQALARRIYG----IYSPQDGLYSS---YSDPLQM--HFYETCPYLKFAH 312
                     689***************************************************9....77544333333...5566555..5************ PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     +taNqaIlea++++ rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+++p+++  +++l+++g++La++Ae++gv+fefn +v+++ledl
  XP_023550819.1 313 FTANQAILEAFATAARVHVIDFSLNQGMQWPALMQALALRPGGPPAFRLTGISPPQPDnTADSLQQVGWKLAQMAEAIGVEFEFNHIVCSNLEDL 407
                     **********************************************************999********************************** PP

            GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres.e 280
                     ++ +L+++p   Ea+aVn+v+ lhrll++++++e+    vL l+k+++Pk+v++veqea+hn++ Fl+rf+eal+yys lfdsl  ++++ e  +
  XP_023550819.1 408 DPAALKIRPtaVEAVAVNSVFDLHRLLARPGAIEK----VLGLIKTTQPKIVTIVEQEANHNGPIFLDRFTEALHYYSNLFDSLeGSSIGFEPaN 498
                     *********999***********************....*********************************************65666655459 PP

            GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     e++ +++++lgr+i+nvvaceg++r+erhe+l +Wr r+e+aGF pv+l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  XP_023550819.1 499 EDVLLSEVYLGRQICNVVACEGTDRVERHESLTQWRTRIESAGFDPVHLGSNAFKQASMLLALFAgGEGYRVEENNGCLMLGWHTRPLIATSAWQ 593
                     **********************************************************************************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    
MKRELEEDRS TADAGRRVVK GECSSLSGGK LKMWEEEEEE EQDANGGGGG GMDELLAVLG  60
YKVRASDMAD VAMKMEQLEM VMGTAQEDGI SHLASDTVHY NPSDLSAWVQ NMLSEFNNST  120
NPNPQSSLYS DSLHRIQSTT SCLYDDDSEY DLSAIPGVAL LPPKDSSAET ETHSRKRLKI  180
GGESSGHLSP SPSSSSPPFV TTAGIVSEPS RPVVVVGEDS QETGIQLVHA LLACAEAVQQ  240
ENMKLADALV KHIGFLAASQ AGAMRKVATY FAQALARRIY GIYSPQDGLY SSYSDPLQMH  300
FYETCPYLKF AHFTANQAIL EAFATAARVH VIDFSLNQGM QWPALMQALA LRPGGPPAFR  360
LTGISPPQPD NTADSLQQVG WKLAQMAEAI GVEFEFNHIV CSNLEDLDPA ALKIRPTAVE  420
AVAVNSVFDL HRLLARPGAI EKVLGLIKTT QPKIVTIVEQ EANHNGPIFL DRFTEALHYY  480
SNLFDSLEGS SIGFEPANED VLLSEVYLGR QICNVVACEG TDRVERHESL TQWRTRIESA  540
GFDPVHLGSN AFKQASMLLA LFAGGEGYRV EENNGCLMLG WHTRPLIATS AWQLAPDGSK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein