PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023550469.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C2H2

Protein Properties

Length: 398aa MW: 43680.1 Da PI: 9.6034

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023550469.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	166	188	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++F ++ L+ H ++ H XP_023550469.1 166 PCSECGEVFMKPEALELHKSVrH 188 7*****************99877 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MASAMAKPKT QTKLTRQTHE NQKPKPPSWA VVRGIFSCKY LQPQQPQEKR QQQEQTTEES 60 RKNCKKMRCS GSLCNNTKVT HEVHKNRALS SSSSRYSKAP PLNEQNGIPS ATCSSLSASS 120 SSNSSSGASF RGMPFRKFYG CYECKMVINP VNGMARDPFL RATIWPCSEC GEVFMKPEAL 180 ELHKSVRHAV SELGPEDTSK NIVEIIFQSS WLKKQTPICK IERILKIHNT SKTISRFEEY 240 RDSIKGKAIK LSKKHPRCIA DGNELLRFHC TTLACSLGLN GSSNLCSSIP QCNVCSIIKH 300 GFKVAAEATG GDAGKGILTT ATSGKAHDSA GMSLDGKDKR AMLVCRVIAG RVKKSSESSV 360 EDYDSLAGEA GLYSNLDELY VFSPKAILPC FVVIYGGF

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MASAMAKPKT QTKLTRQTHE NQKPKPPSWA VVRGIFSCKY LQPQQPQEKR QQQEQTTEES  60
RKNCKKMRCS GSLCNNTKVT HEVHKNRALS SSSSRYSKAP PLNEQNGIPS ATCSSLSASS  120
SSNSSSGASF RGMPFRKFYG CYECKMVINP VNGMARDPFL RATIWPCSEC GEVFMKPEAL  180
ELHKSVRHAV SELGPEDTSK NIVEIIFQSS WLKKQTPICK IERILKIHNT SKTISRFEEY  240
RDSIKGKAIK LSKKHPRCIA DGNELLRFHC TTLACSLGLN GSSNLCSSIP QCNVCSIIKH  300
GFKVAAEATG GDAGKGILTT ATSGKAHDSA GMSLDGKDKR AMLVCRVIAG RVKKSSESSV  360
EDYDSLAGEA GLYSNLDELY VFSPKAILPC FVVIYGGF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	3e-95	C2H2 family protein