PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023550237.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 482aa MW: 52649.9 Da PI: 5.242

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023550237.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.7	2.4e-09	299	347	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq XP_023550237.1 299 NSHSLAERVRREKISERMRLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 347 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MNGKDEFEDE SRRSDPMSIT SGWQFAAAVS NEDLSVSSCP STSMSNLFTP ALMNSGFCSS 60 FNEQNSIVTG EGLNSLRSNG VDWNQQNPWM KGGFPGNVHG FPANLSQLPA DSAFIERAAR 120 FSCFNSGVFG ASLPVGAFDI SNSIGIHSRQ EVMSRNVASK DGSLPMELEA KEKSPSKNET 180 ECEMSQARGK ESDEAGFSGG HGERCVLEGT ITEPSTDELC SRKRKRDEQN IELGQVKEAP 240 QQINQTAKNG ASNQQKGTQN PSSTTNKPAE KQGKQDSQPS DAPKEEYIHV RARRGQATNS 300 HSLAERVRRE KISERMRLLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV 360 NPRLDFNIEE LLTKEIIQSK AGPSLFSFPP DMPMPYLPQH PSHLGLIPPC LPNMASSPDL 420 LRRTINSQLT SLVGGFKEPV QLLQIPNGWE NELHNAVPMS FDVAAPTSGQ DVDGTICSSL 480 PM

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MNGKDEFEDE SRRSDPMSIT SGWQFAAAVS NEDLSVSSCP STSMSNLFTP ALMNSGFCSS  60
FNEQNSIVTG EGLNSLRSNG VDWNQQNPWM KGGFPGNVHG FPANLSQLPA DSAFIERAAR  120
FSCFNSGVFG ASLPVGAFDI SNSIGIHSRQ EVMSRNVASK DGSLPMELEA KEKSPSKNET  180
ECEMSQARGK ESDEAGFSGG HGERCVLEGT ITEPSTDELC SRKRKRDEQN IELGQVKEAP  240
QQINQTAKNG ASNQQKGTQN PSSTTNKPAE KQGKQDSQPS DAPKEEYIHV RARRGQATNS  300
HSLAERVRRE KISERMRLLQ DLVPGCSKVT GKAVMLDEII NYVQSLQRQV EFLSMKLATV  360
NPRLDFNIEE LLTKEIIQSK AGPSLFSFPP DMPMPYLPQH PSHLGLIPPC LPNMASSPDL  420
LRRTINSQLT SLVGGFKEPV QLLQIPNGWE NELHNAVPMS FDVAAPTSGQ DVDGTICSSL  480
PM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-84	bHLH family protein