PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023550204.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | ARF | ||||||||
Protein Properties | Length: 593aa MW: 65824.5 Da PI: 6.9487 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.4 | 1.6e-24 | 27 | 128 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f+kvlt sd++++g +++ +k+a+e+ + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + + XP_023550204.1 27 FCKVLTASDTSTHGGFSVLRKHATEClppldmtQ--ATPTQDLVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLSAGDSFVFL--RGD 117 99****************************9543..445568************************************************..348 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++e++v+v+r+ XP_023550204.1 118 NGEMHVGVRRR 128 999******97 PP | |||||||
2 | Auxin_resp | 100.1 | 3.1e-33 | 153 | 231 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 a+ha++t++ F v+Y+Pr+ +F+++++k+++a+++k+svGmRf m+fe+eds+err+sGt++g +d++p +WpnS WrsL XP_023550204.1 153 ASHAVTTQTRFVVYYKPRT--CQFIISLNKYLEAVNNKFSVGMRFNMSFEGEDSPERRFSGTIIGATDISP-HWPNSSWRSL 231 689***************6..89**********************************************99.*********9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 593 aa Download sequence |
MPESNQNEPN SLDPCRPEPA RPVVHSFCKV LTASDTSTHG GFSVLRKHAT ECLPPLDMTQ 60 ATPTQDLVAK DLHGYEWRFK HIFRGQPRRH LLTTGWSTFV TSKRLSAGDS FVFLRGDNGE 120 MHVGVRRRAR QQSSMPSSVI SSQSMHLGVL ATASHAVTTQ TRFVVYYKPR TCQFIISLNK 180 YLEAVNNKFS VGMRFNMSFE GEDSPERRFS GTIIGATDIS PHWPNSSWRS LRVQWDEQTS 240 ILRPDRVSPW DIEPLTSSAV TGLSQPISKN KRPRQSTPAH DGADLPKPAL WDSGLAESHD 300 GKQSSNAAES RKGENNELCH HRETDAISNR TCVSRTQADG TWLSSTQSNS HKHPVNDMAQ 360 DYKTVPGCGW SFLSGPSTSH LVKLSDEQIL DSTENGRKGE TVASCRLFGI DLNHLAKLPA 420 EKASYQPSSV SSDTDGRSST LSVAQSDPKS DNLEVSVERK SEPLQASLKE TQSNQSSSAN 480 TRSRTKVHMH GMAVGRAVDL TILEGYDQLI DELEKMFDVR GQLCARDKWE IVYTDDEGDM 540 MLVGDDPWEE FCNMVRRIFI CSREQVKKMS SGSKQLTSIE VEGAAIIPDS PAV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23980.2 | 0.0 | ARF family protein |