PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023550013.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family GRAS
Protein Properties Length: 586aa    MW: 64225.7 Da    PI: 5.6749
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023550013.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS334.71.7e-1022305865374
            GRAS   5 LlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                     ++e+A a+s+g+le ++++L       +p   ++ +la +++ AL++r++      ++ +pp   +    +e++aa++l+++vsP++k+++++aN
  XP_023550013.1 230 VIEAAAAISDGKLEGIDEIL-------APVVVSNSKLAEFMVFALKSRVNP-----VE-FPPPVME-IYGEEHTAATQLLYDVSPCFKLAFMAAN 310
                     55666666666655555555.......566677889**************9.....33.3333332.35999*********************** PP

            GRAS 100 qaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193
                      aIlea+ ++ +++H++Dfdi++G+Q+++L++ L++R++g+ s+++T+v+ +esg +e+l+++ge L+++A+elgv fefn+ v ++l++l+ e 
  XP_023550013.1 311 LAILEAIGEDdRKMHVVDFDIGKGGQYMNLIHLLSNRQKGKVSVKLTAVVTAESGGEERLKQVGESLSQLADELGVGFEFNI-VRHKLAELTREL 404
                     *******9886889*******************************************************************9.799********* PP

            GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                     L ++p+E laVn++++l+r++desvs+e++rde+L+ vk l P+vv+v+eqe+++n+++F +r++e++ yys+lf+s+++++ r++ +r+kvE+ 
  XP_023550013.1 405 LGCEPDELLAVNFAFKLYRMPDESVSTENPRDELLRSVKALAPTVVTVMEQELNMNTAPFKARVAESCIYYSSLFESIDSTMQRDHPDRVKVEEG 499
                     *********************************************************************************************** PP

            GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +gr++ n +aceg++r+er+e ++kWr+rl++aGF++ p+s+++a+++k+ l+  +  + g++v+ee+g +++gW++r+L++++aWr
  XP_023550013.1 500 -IGRKLANSLACEGRDRVERCEVAGKWRARLGMAGFEARPISQTVAESMKTRLSSGYrvNPGFTVKEENGGICFGWMGRTLTVTTAWR 586
                     .*************************************************99887655889**************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    
MQSGFTGGGA PDFYTAGRSI PNPSQPNPYR SQLPGGAFLD PTTGQIGRQI PSSLLGKRNL  60
ADLQHTHHHN LPLNNLFLRS VKPRAFAHPI SPLSNLDFYS TMSLPSPDVQ SHRLYGTSSA  120
ALLQQLRQQP NGVVPVRDLQ SLDTEKKMIM NHRLQELEKE LLEDIDDDDG SDAVSVITNS  180
NSPWCETIYN LISPTVAQNP SPTSSASSSC SSSTSSSVAS KASDSWKQSV IEAAAAISDG  240
KLEGIDEILA PVVVSNSKLA EFMVFALKSR VNPVEFPPPV MEIYGEEHTA ATQLLYDVSP  300
CFKLAFMAAN LAILEAIGED DRKMHVVDFD IGKGGQYMNL IHLLSNRQKG KVSVKLTAVV  360
TAESGGEERL KQVGESLSQL ADELGVGFEF NIVRHKLAEL TRELLGCEPD ELLAVNFAFK  420
LYRMPDESVS TENPRDELLR SVKALAPTVV TVMEQELNMN TAPFKARVAE SCIYYSSLFE  480
SIDSTMQRDH PDRVKVEEGI GRKLANSLAC EGRDRVERCE VAGKWRARLG MAGFEARPIS  540
QTVAESMKTR LSSGYRVNPG FTVKEENGGI CFGWMGRTLT VTTAWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-142GRAS family protein